PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_9940V3.2.p
Common NamePHYPADRAFT_79416
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 227aa    MW: 24962.8 Da    PI: 8.1367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_9940V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.9e-18655255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa a+++a++ + g
  Pp3c14_9940V3.2.p  6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRVWLGTFETAEDAAHAYDEAARLMCG 55
                       69******9.**********8.....334**********************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.98E-31565No hitNo description
PfamPF008475.9E-11655IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-20664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-34663IPR001471AP2/ERF domain
PROSITE profilePS5103220.824663IPR001471AP2/ERF domain
SMARTSM003802.8E-38669IPR001471AP2/ERF domain
PRINTSPR003671.2E-10718IPR001471AP2/ERF domain
PRINTSPR003671.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRPQRYRGV RQRHWGSWVS EIRHPLLKTR VWLGTFETAE DAAHAYDEAA RLMCGARART  60
NFPYDPNAPK GLNSQMLSAT LSAKLQRWYV QSQQRGGAQG KTKDARMTQS LTCLCLDAEQ  120
SNLGIWQKKT GKQAEANWVR KVQFRDNASL HADSPQPENS SGSSMSEEDK FAAEMIEELL  180
GHSPGQFSDF GSPALSDSSC SSSPCSGITA ASKWDVSLSH FDCISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-16563160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-16268168ATERF1
3gcc_A2e-16268168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393916.11e-169ethylene-responsive transcription factor ERF003-like
TrEMBLA0A2K1JHW11e-168A0A2K1JHW1_PHYPA; Uncharacterized protein
STRINGPP1S79_25V6.11e-157(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-40ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]