PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_8460V3.1.p
Common NamePHYPADRAFT_164899
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 266aa    MW: 29449.1 Da    PI: 8.2702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_8460V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-1266108247
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47 
                         y+GVr++   g++v+eIr        + k+++lg+++ta eAa+a +
  Pp3c14_8460V3.1.p  66 EYRGVRYRDGLGKYVSEIRPtK-----SlKKIWLGTYDTAREAARAFD 108
                        69****************9933.....68****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-765106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1766125IPR001471AP2/ERF domain
PROSITE profilePS5103214.69766126IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1266123IPR016177DNA-binding domain
SMARTSM003801.6E-1066125IPR001471AP2/ERF domain
CDDcd000187.16E-1567125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGSKIPRRCA EQASPRGRRR NSRRSFFGST SPSSSISDSP SPPRRRDALR QILGDLVHPN  60
STAVPEYRGV RYRDGLGKYV SEIRPTKSLK KIWLGTYDTA REAARAFDIG NLCCKKNLPL  120
NFEDSPRLLR KISSHLSPEA QRSAIAKLAK EVAGLEKKNS GSTNDGMVAT HVDTTYKLST  180
QHSSAPDIQS CTYTEQPLDT VCTMEVASST LLREGIGHGC FSFNRDLNQI ILDDDLASIE  240
ALMYEFDFDQ EAMDCNIFGD GYYPP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.25520.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386009.14e-79ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A2K1JGY10.0A0A2K1JGY1_PHYPA; Uncharacterized protein
TrEMBLA9SHI00.0A9SHI0_PHYPA; Predicted protein
STRINGPP1S79_169V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-14ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]