PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_7060V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YC
Protein Properties Length: 313aa    MW: 35363.9 Da    PI: 6.1513
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_7060V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC180.51.5e-561012041101
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        ql++fw++q   ie+a+dfknh+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdif
  Pp3c14_7060V3.2.p 101 QLQMFWANQmseIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIF 192
                        89*******88889****************************************************************************** PP

              NF-YC  90 dflvdivprdel 101
                        dflvdivprdel
  Pp3c14_7060V3.2.p 193 DFLVDIVPRDEL 204
                        *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.16E-3490195IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.8E-38115187IPR009072Histone-fold
PfamPF008081.9E-21123186IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MENRSQLAQQ QAQQQQDVQQ QQQQQTVNNM MAQQQPQMQY SQNMGTQQPY QGSQTVGGPD  60
TSPSQGGQMQ GQSPAAYPAA LAQQQQVQLS YQHLQQHHQQ QLQMFWANQM SEIEQANDFK  120
NHQLPLARIK KIMKADEDVR MISAEAPVLF AKACEMFILE LTLRSWIHTE ENKRRTLQKN  180
DIAAAITRTD IFDFLVDIVP RDELNKEDGI GVPRGTMPVG SPVSYEGVYY VPTPQGPVPQ  240
PAMVSPAMMG NQMFGARPAM AMDPTAMYHP QQQQPQRPPM QYMQQQAPMQ QMWPQQTTQM  300
PPTQHTSMPP SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-55109201395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.159750.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395634.10.0nuclear transcription factor Y subunit C-2-like
TrEMBLA0A2K1JHG60.0A0A2K1JHG6_PHYPA; Uncharacterized protein
STRINGPP1S409_32V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-71nuclear factor Y, subunit C2