PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_7060V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YC | ||||||||
Protein Properties | Length: 313aa MW: 35363.9 Da PI: 6.1513 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 180.5 | 1.5e-56 | 101 | 204 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdif Pp3c14_7060V3.1.p 101 QLQMFWANQmseIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIF 192 89*******88889****************************************************************************** PP NF-YC 90 dflvdivprdel 101 dflvdivprdel Pp3c14_7060V3.1.p 193 DFLVDIVPRDEL 204 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.16E-34 | 90 | 195 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.8E-38 | 115 | 187 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-21 | 123 | 186 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MENRSQLAQQ QAQQQQDVQQ QQQQQTVNNM MAQQQPQMQY SQNMGTQQPY QGSQTVGGPD 60 TSPSQGGQMQ GQSPAAYPAA LAQQQQVQLS YQHLQQHHQQ QLQMFWANQM SEIEQANDFK 120 NHQLPLARIK KIMKADEDVR MISAEAPVLF AKACEMFILE LTLRSWIHTE ENKRRTLQKN 180 DIAAAITRTD IFDFLVDIVP RDELNKEDGI GVPRGTMPVG SPVSYEGVYY VPTPQGPVPQ 240 PAMVSPAMMG NQMFGARPAM AMDPTAMYHP QQQQPQRPPM QYMQQQAPMQ QMWPQQTTQM 300 PPTQHTSMPP SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-55 | 109 | 201 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 179 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15975 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395634.1 | 0.0 | nuclear transcription factor Y subunit C-2-like | ||||
TrEMBL | A0A2K1JHG6 | 0.0 | A0A2K1JHG6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S409_32V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-71 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_7060V3.1.p |