PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c14_4980V3.5.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 536aa MW: 58983.9 Da PI: 5.8396

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_4980V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.8	2.1e-28	439	488	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ei+l++ls+yF++pi++A+keL+v+lTvLK++CR++GI+RWPhRk+ksl Pp3c14_4980V3.5.p 439 TEITLHELSQYFHMPITQASKELKVGLTVLKKRCREFGIPRWPHRKMKSL 488 68**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.053	425	509	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-23	441	488	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MGCSNTRVPV TNAAHGSLCA LAVFQHFSNL ELIKSVHLYM DDGFVTAVQQ EFLLSPDVYT 60 QISEPIPSYF SRFAHNGAKQ FIDTLKQLNE ADLWQCVLEY HVHTPQDTSI IPLLSVSKNP 120 ALYYIPSLAE DLVLVEKAVQ IPAHEHQQCI PLRGPDCLDA QQHFPACGGQ SYIDGSQLTW 180 NFPKWGLAGF SGFTVESAGM NDGVQSESNS QAETLHDWGS DLELASPRMF ETCVLGSSWS 240 TSISSMPFTG LMSSSCLISN VASNNKSDPV SWSPSSLVLE SQMAGSYAFH EVLPFSDDSN 300 CGQMKLTTSS DASQSPALCH GDLFLSPLCT SSTMSDRVSP RSPLLKKVVE SAMSYCSDES 360 LSEPAGSDRP KGGFSSAALP FDSQKCRIIN HRGEVLTHQP CSYELSEPGH DVGHVGECHS 420 MLEMGAEPCN QRGATERMTE ITLHELSQYF HMPITQASKE LKVGLTVLKK RCREFGIPRW 480 PHRKMKSLDS LIQNIQVTFR LGLCMLVWDW VWLIPSHVNG SLIFSFMKTI LASLR*

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MGCSNTRVPV TNAAHGSLCA LAVFQHFSNL ELIKSVHLYM DDGFVTAVQQ EFLLSPDVYT  60
QISEPIPSYF SRFAHNGAKQ FIDTLKQLNE ADLWQCVLEY HVHTPQDTSI IPLLSVSKNP  120
ALYYIPSLAE DLVLVEKAVQ IPAHEHQQCI PLRGPDCLDA QQHFPACGGQ SYIDGSQLTW  180
NFPKWGLAGF SGFTVESAGM NDGVQSESNS QAETLHDWGS DLELASPRMF ETCVLGSSWS  240
TSISSMPFTG LMSSSCLISN VASNNKSDPV SWSPSSLVLE SQMAGSYAFH EVLPFSDDSN  300
CGQMKLTTSS DASQSPALCH GDLFLSPLCT SSTMSDRVSP RSPLLKKVVE SAMSYCSDES  360
LSEPAGSDRP KGGFSSAALP FDSQKCRIIN HRGEVLTHQP CSYELSEPGH DVGHVGECHS  420
MLEMGAEPCN QRGATERMTE ITLHELSQYF HMPITQASKE LKVGLTVLKK RCREFGIPRW  480
PHRKMKSLDS LIQNIQVTFR LGLCMLVWDW VWLIPSHVNG SLIFSFMKTI LASLR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024393880.1	0.0	uncharacterized protein LOC112291106 isoform X1
Refseq	XP_024393881.1	0.0	uncharacterized protein LOC112291106 isoform X1
Refseq	XP_024393883.1	0.0	uncharacterized protein LOC112291106 isoform X1
TrEMBL	A0A2K1JGE8	0.0	A0A2K1JGE8_PHYPA; Uncharacterized protein
STRING	PP1S823_1V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-22	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c14_4980V3.5.p