PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_4880V3.3.p
Common NamePHYPADRAFT_188998
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 340aa    MW: 37320.2 Da    PI: 8.8838
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_4880V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.69.6e-124585444
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                        k+ rr+++NReAAr+sR+RKka++++Le    +L +  ++
  Pp3c14_4880V3.3.p 45 FKVLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNELEQE 85
                       5899*************************865555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-442108IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0594488IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-84589No hitNo description
SuperFamilySSF579591.75E-74690No hitNo description
PfamPF001702.7E-84686IPR004827Basic-leucine zipper domain
CDDcd147081.77E-244698No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141442.7E-30140214IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MRDSSAKTDT SSDMDGDPKL DDGHHLVTGG SNDSSHEAGT KNGDFKVLRR LAQNREAARK  60
SRLRKKAYVQ QLESSRIKLN ELEQELQRTR QQGLYLGPGS CSVDQNGHSA GGTWGTNSSS  120
VAAAFDMEYA KWVEEHHRQT SKLRAALQGH VADSELRVLV DAGLAHYDDL FRLKAVVSKA  180
DVFHLVSGIW KSPAERCFMW MGGFRPSGLL KILLPQIEPL TDQQASNICN LQKASQQVED  240
ALSQGMEVLQ QSLADALSVG SLGSSANVAI YMGQMAMAMG KLGTLEAFMC QADKIRQQTL  300
QQMHRVLTTR QAARGLLAMG DYFARLRALS SLWSARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.142020.0gametophore| protonema
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394712.10.0transcription factor TGA2.3-like isoform X2
SwissprotO241601e-143TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA9SW240.0A9SW24_PHYPA; Predicted protein
STRINGPP1S126_196V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-123TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]