PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_4880V3.14.p | ||||||||
Common Name | PHYPADRAFT_188998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bZIP | ||||||||
Protein Properties | Length: 340aa MW: 37320.2 Da PI: 8.8838 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.6 | 9.6e-12 | 45 | 85 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k+ rr+++NReAAr+sR+RKka++++Le +L + ++ Pp3c14_4880V3.14.p 45 FKVLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNELEQE 85 5899*************************865555554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-4 | 42 | 108 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.059 | 44 | 88 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.8E-8 | 45 | 89 | No hit | No description |
SuperFamily | SSF57959 | 1.75E-7 | 46 | 90 | No hit | No description |
Pfam | PF00170 | 2.7E-8 | 46 | 86 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 1.77E-24 | 46 | 98 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.7E-30 | 140 | 214 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MRDSSAKTDT SSDMDGDPKL DDGHHLVTGG SNDSSHEAGT KNGDFKVLRR LAQNREAARK 60 SRLRKKAYVQ QLESSRIKLN ELEQELQRTR QQGLYLGPGS CSVDQNGHSA GGTWGTNSSS 120 VAAAFDMEYA KWVEEHHRQT SKLRAALQGH VADSELRVLV DAGLAHYDDL FRLKAVVSKA 180 DVFHLVSGIW KSPAERCFMW MGGFRPSGLL KILLPQIEPL TDQQASNICN LQKASQQVED 240 ALSQGMEVLQ QSLADALSVG SLGSSANVAI YMGQMAMAMG KLGTLEAFMC QADKIRQQTL 300 QQMHRVLTTR QAARGLLAMG DYFARLRALS SLWSARPRE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14202 | 0.0 | gametophore| protonema |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394712.1 | 0.0 | transcription factor TGA2.3-like isoform X2 | ||||
Swissprot | O24160 | 1e-143 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A9SW24 | 0.0 | A9SW24_PHYPA; Predicted protein | ||||
STRING | PP1S126_196V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-123 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_4880V3.14.p |
Entrez Gene | 5933724 |
Publications ? help Back to Top | |||
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