PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_3280V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 506aa MW: 54368.7 Da PI: 4.4596 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.4e-21 | 212 | 261 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdps+ r +lg+++tae+Aa+a+++a+++++g Pp3c14_3280V3.1.p 212 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEQAAQAYDKAAREIRG 261 8********.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.41E-32 | 211 | 268 | No hit | No description |
PROSITE profile | PS51032 | 24.026 | 212 | 269 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-22 | 212 | 270 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-39 | 212 | 275 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.8E-14 | 212 | 261 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-32 | 212 | 270 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-11 | 213 | 224 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-11 | 235 | 251 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MYSSGCITPR SLKRKSFSIV HGKTVNSDYC CSSSDAEGAQ NDGFQKVPKR VICTDPDATD 60 SSSDEKDNFH SVRNPHRRLQ EIHISTMVDE SASDSEVDEL EVPSYHSVFT AEAMQCTVSY 120 ASPVDGDAML ESSRFYKKSW QSQKKALKMP EKKMPKDAQP ATPAAKTAKG SVAGWAPVGR 180 STTVSTAKPT VAAKRQTKGA LVATGIHGKP QKYRGVRQRP WGKWAAEIRD PSKGVRLWLG 240 TYDTAEQAAQ AYDKAAREIR GPSAHTNFSE ERELEQSGAV VRTMTTSGCE ASCAKSRKGE 300 EGRRRGKEEG ERCGRGEVEE GEEEEELRTA GGCDSIEEGA MSGEVALDDL SEELGNLSEE 360 LENWSEECGY WMGPPCSSSP SMEESEGSPC SSLTGCSERV GRGGGGEELV TSSSYGNSCE 420 SERAKEGNGT VEVQSGSGLG EVFLSDDFMM DWAGVGVGVG DDGGAGMVEF GAGLEFLGDD 480 VDYLEFDCDG RESFDWLNGS DILVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 211 | 268 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 7e-19 | 205 | 274 | 7 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393885.1 | 0.0 | uncharacterized protein LOC112291107 | ||||
TrEMBL | A0A2K1JG70 | 0.0 | A0A2K1JG70_PHYPA; Uncharacterized protein | ||||
STRING | PP1S126_30V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 2e-20 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_3280V3.1.p |