PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_24090V3.7.p
Common NamePHYPADRAFT_57561
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 396aa    MW: 42994.9 Da    PI: 6.6878
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_24090V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.17.9e-16279315135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kg+
  Pp3c14_24090V3.7.p 279 CVHCGIGErsTPMMRRGPAGPRTLCNACGLMWANKGV 315
                         ****866666************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.4E-12136171IPR010399Tify domain
PROSITE profilePS5132015.761136171IPR010399Tify domain
PfamPF062009.8E-15138170IPR010399Tify domain
PfamPF062032.5E-15204246IPR010402CCT domain
PROSITE profilePS5101713.225204246IPR010402CCT domain
SMARTSM004012.0E-11273326IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.038273321IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-11276322No hitNo description
Gene3DG3DSA:3.30.50.108.9E-16277320IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.35E-15278321No hitNo description
PROSITE patternPS003440279306IPR000679Zinc finger, GATA-type
PfamPF003201.3E-13279315IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MRPEEVDVGG MSDVDHLVHG QSLQLHHNIH QHSLDHALGH AQHGMHEMHV HGHGHGEADV  60
QGRVDQRVQR HLEGDHVHGH NGHHGHGHGM HHNEENGAGV EDHDDDAGDE EGLDEAEMHS  120
DGGGNPGDAP PALAIRTQGS TQLTLSYQGE VYVFDAVPPE KVQAVLLLLG GREIPPGMSG  180
GNVSSHHHHK GMPELPSRMN MPQRLASLTR FREKRKERCY DKKIRYTVRK EVAQRMQRKK  240
GQFASSRPTQ EEGSPVSNWD GTQASGQPLG PGVQPEVSCV HCGIGERSTP MMRRGPAGPR  300
TLCNACGLMW ANKGVLRDLS KNLPMTAGGQ QQLMLHPQQI FLQQQQDQVG GLQHSLENVS  360
QVADVQMGIQ QREVDEQKSM ASMVAVGGGP VVAAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.20770.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395439.10.0GATA transcription factor 28-like isoform X1
RefseqXP_024395440.10.0GATA transcription factor 28-like isoform X1
RefseqXP_024395441.10.0GATA transcription factor 28-like isoform X1
RefseqXP_024395442.10.0GATA transcription factor 28-like isoform X1
RefseqXP_024395443.10.0GATA transcription factor 28-like isoform X1
SwissprotQ8H1G04e-80GAT28_ARATH; GATA transcription factor 28
TrEMBLA9SE080.0A9SE08_PHYPA; Predicted protein
STRINGPP1S69_103V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.25e-79ZIM-LIKE 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]