PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_24070V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 306aa    MW: 33612 Da    PI: 9.1791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_24070V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09114162355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L+ l+P +    s+   Ka +Le+ ++Y+ksLq
  Pp3c14_24070V3.1.p 114 NSHSLAERARREKISNRMKFLQALVPGC----SEVTGKAVMLEEIINYVKSLQ 162
                         58*************************9....888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-16109178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-10109166No hitNo description
PROSITE profilePS5088814.805111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-16112178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6114162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAERVNTGSL DLRGAVSSTA GARSGCGIQE ECSTVHQDTV SSSSMKQSAG LGHGSSSASR  60
NRKGFSAEQR CLNSISKCDG CEPSASRGKK VKNKEQPPKQ GFIHVRARRG QATNSHSLAE  120
RARREKISNR MKFLQALVPG CSEVTGKAVM LEEIINYVKS LQRQIEFLSM KLAAVDPRLD  180
TNVEGLLKME LHQVRSPEST LMSPDPIVGY QGLCQPHFHI QKIQQQTNHC NMDLRYVGTL  240
SNAHFRRGSW NEPPTHAPPT CTDYVLDSLT QTFRESDGSL QTLVQMVNPQ IMQNLRGQSL  300
HGEPL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394163.10.0transcription factor bHLH49-like
RefseqXP_024394164.10.0transcription factor bHLH49-like
SwissprotQ9CAA91e-48BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A2K1JJ380.0A0A2K1JJ38_PHYPA; Uncharacterized protein
STRINGPP1S69_101V6.11e-135(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.29e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]