PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_24040V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 597aa    MW: 64628.4 Da    PI: 6.3997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_24040V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-09397444455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +     +K   Ka +L + ++Y++sLq
  Pp3c14_24040V3.1.p 397 SHSLAERVRREKISERMKYLQDLVPGC-----RKvTGKAVMLDEIINYVQSLQ 444
                         8*************************9.....67799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16391458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-10391448No hitNo description
PROSITE profilePS5088815.707393443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-17393457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-6397444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10399449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MAIMAPAPDQ AFMGMRINRS ATVPVLYPSA DTMGFSSGLE KIVEPSACGT FPHSRPSIAS  60
SLQYPSWQFL QEMPIMADAN FGCSTPEFPR STVTNDWLNP SQGRFTTTLP PSSWGLSGSR  120
GIMEDARIRD VMSKSRKNLS VQRLDSWGSL DTGGITLDPS KGGLGLHEAS PNVDRLAQFN  180
SDPAFDERAT KFSSFGVNSE KYVPQIVQRP ASGMVPSPAK LVQGAALEEK CTVPAAAASV  240
QPELEAIEGV TEATVDAIPH VEVEVAALQE FTNNSSCTEL QPGCQGVRSP SAASPARSAP  300
NHDDTASRNK RKKLPGVDKN LVSPDSKIAD EENSKPKRCK GEDGRPTSKG ERSSSETSFE  360
SAGSPKVTQK EGNQKLTEYS KQDYIHVRAR RGQATDSHSL AERVRREKIS ERMKYLQDLV  420
PGCRKVTGKA VMLDEIINYV QSLQRQVESL SMKVAAVHPA PSDHLTLESL LSSEEVLQSQ  480
LSNILCTSDS TSSAAFGLQQ LPQQRGSMLD GHCNFDHFQA NLGYGFDGSS HRTMSTPIGN  540
FAEMQTMVNS FDNNLVSQTT GWGDSLPSVM HMAQLQQQAG HLGSYQLPVG HMKVEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395738.10.0transcription factor bHLH49-like
TrEMBLA0A2K1JJ330.0A0A2K1JJ33_PHYPA; Uncharacterized protein
STRINGPP1S69_95V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-42bHLH family protein