PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_22690V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 97aa MW: 10606.8 Da PI: 10.5764 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 114.1 | 6.1e-36 | 32 | 96 | 6 | 70 |
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + + GlnPGlivl+vv g l+vflvgn+ ly yaqknlP +kkkPvskkklk+eklk Gv +PG+ Pp3c14_22690V3.3.p 32 ETSSGLNPGLIVLIVVLGSLVVFLVGNFFLYQYAQKNLPAKKKKPVSKKKLKKEKLKAGVRPPGD 96 3459***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 2.1E-32 | 33 | 96 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MRIRFLPVAT CSNHLSLCNE LIVCGLEQRD VETSSGLNPG LIVLIVVLGS LVVFLVGNFF 60 LYQYAQKNLP AKKKKPVSKK KLKKEKLKAG VRPPGD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.5635 | 1e-115 | protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393659.1 | 1e-40 | DNA-binding protein S1FA-like | ||||
TrEMBL | A0A2K1JIX2 | 3e-39 | A0A2K1JIX2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S34_425V6.1 | 5e-40 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5095 | 13 | 22 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_22690V3.3.p |