PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c14_22690V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

S1Fa-like

Protein Properties

Length: 80aa MW: 8540.23 Da PI: 11.0255

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_22690V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	115.5	2.3e-36	14	79	6	70
S1FA 6 vea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ve+ GlnPGlivl+vv g l+vflvgn+ ly yaqknlP +kkkPvskkklk+eklk Gv +PG+ Pp3c14_22690V3.2.p 14 VETsSGLNPGLIVLIVVLGSLVVFLVGNFFLYQYAQKNLPAKKKKPVSKKKLKKEKLKAGVRPPGD 79 55449***********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.1E-32	16	79	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MAKPGSAFNA TRDVETSSGL NPGLIVLIVV LGSLVVFLVG NFFLYQYAQK NLPAKKKKPV 60 SKKKLKKEKL KAGVRPPGD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.5635	1e-134	protonema\| sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024393659.1	4e-49	DNA-binding protein S1FA-like
TrEMBL	A0A2K1JIX2	1e-47	A0A2K1JIX2_PHYPA; Uncharacterized protein
STRING	PP1S34_425V6.1	2e-48	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c14_22690V3.2.p