PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_18960V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 1311aa    MW: 142499 Da    PI: 5.598
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_18960V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.3e-40214291178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqv+gC+adls+ak+yhrrhkvCe+hska+++ vs ++qrfCqqCsrfh+l++fDe+krsCrrrLa+hn+rrrk+q+
  Pp3c14_18960V3.4.p 214 TCQVDGCTADLSKAKDYHRRHKVCETHSKASTAQVSRVTQRFCQQCSRFHALDQFDEGKRSCRRRLAGHNKRRRKTQP 291
                         6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.0E-33207276IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.906212289IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-37213293IPR004333Transcription factor, SBP-box
PfamPF031108.7E-30215288IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.71E-910351099IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.9E-1010711205IPR020683Ankyrin repeat-containing domain
CDDcd002041.97E-810731192No hitNo description
SMARTSM002481110731102IPR002110Ankyrin repeat
SuperFamilySSF484031.71E-911281193IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029710.111341206IPR020683Ankyrin repeat-containing domain
SMARTSM0024816011341166IPR002110Ankyrin repeat
SMARTSM0024883011741203IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1311 aa     Download sequence    Send to blast
MERHVGQISV EGLPFIQHQF FPGGGGIPQL HPNGRGVSAV DRSSELPWST GQTGSNWNYC  60
GLSDNAERAI HRDDWNANSW RLDGYTLNAQ RVSRAPDGTG SESSKNLTSG ENEHRSRGAD  120
LGLQLDIRAA GTPEANHPVI HIDDDESEVQ GQSLFGRHTP SPPSNEPNPY NRGNDSPEDD  180
GPLSLKLGGS SYAYVENGAG KRPRSSSPPS QIPTCQVDGC TADLSKAKDY HRRHKVCETH  240
SKASTAQVSR VTQRFCQQCS RFHALDQFDE GKRSCRRRLA GHNKRRRKTQ PDAPAPRVED  300
QAGVNNTDIM TLLGLLSQLK GPLDQASAAT SERDILLQCL RQAGNLNLPN SSLEGLSRAP  360
PSWSQLTRNS DPAQPPIDPR LLAAQLAAHA PPATLPQQDA ITMLLQNNLK QAARIAQENM  420
YNRVGFNGNM NGVPSPYAAL NADASASYGV PQVNNERTSS AAGFSLPLSV RVPGSVPGNV  480
VPAQLLASVA LSLQQSLAAQ TASQDNHLAA NGYGTSLPTA HRGNPDQSPV DTRNFPHQRF  540
ARHEDNDATV HSQVGMQRQA SQSGASHFHK RPFLESQKSQ PPLQRPSIDL QQPLPSEQCS  600
DTSETGSGSG SGSGSGSGSG SGHQSPGTPN RESEHNRISF KLFNKHPTQF PDGLRSKINE  660
WLSHRPTDME GFIRPGCIIL TIFLSMPKFA WAELISDLPG SLQRLLSTGC EFWCTGRMLV  720
QVEQQTVLVE DGEIVACKTS DPFESPYLLS VRPLAVVPGQ QNRLIVKGFN LTTAATRLLC  780
AFRGQYFSAE VHHQHHSDVE SVASVDETED TDDTLDRLVE NDTVSGYEKN ASLDLVDGES  840
SIDDVSYRPS SSSAVPEASE VARVSVNDTD ASEQEDSAEG GEVADNDINF DYYSRSSVST  900
SLFSSQAICD LDTSVLPSAM PAGGFGRCFI EVDQDSLVGN WKPVIVADKP VAAEICTLED  960
EIEMAAGFAE IRAKQYGLDP SLVLYCTALA RLAEEEDVTQ FLNELGWFFQ RSYYGNLNFS  1020
LPTTQASFTK LEQLLVFSVE RNWCAVVRKL LDIAFETGDW EATFMVLSEM SQEGSSLLHR  1080
AVRNKKRPMV ELLLGFAPSF LAGINDSDVE SFKRKLEFRL KWSSIYKPDM RGPGGLTPLH  1140
IAASIHGAED IVDALTTGPS QDALHAWLHK KDDSGATPLD LAKAGGNMKS VQVVRAKLAK  1200
IENPDSIAID IAAGWDHRRA ESIVQAMELS QRRASEGIGA TRSDETPVCR EVDFARLPRD  1260
VCGVKGAMYR PFLVSIMGIA CICVCVCLLL RGPQNVLPLF TWSGLEQGKE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-32206288284squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.164810.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0164950.0EF016495.1 Physcomitrella patens SBP-domain protein 10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393534.10.0squamosa promoter-binding-like protein 1
TrEMBLA0A2K1JIB70.0A0A2K1JIB7_PHYPA; Uncharacterized protein
STRINGPP1S313_76V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.14e-38squamosa promoter-binding protein-like 12