PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_18960V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | SBP | ||||||||
Protein Properties | Length: 1311aa MW: 142499 Da PI: 5.598 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.6 | 2.3e-40 | 214 | 291 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+adls+ak+yhrrhkvCe+hska+++ vs ++qrfCqqCsrfh+l++fDe+krsCrrrLa+hn+rrrk+q+ Pp3c14_18960V3.3.p 214 TCQVDGCTADLSKAKDYHRRHKVCETHSKASTAQVSRVTQRFCQQCSRFHALDQFDEGKRSCRRRLAGHNKRRRKTQP 291 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.0E-33 | 207 | 276 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.906 | 212 | 289 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-37 | 213 | 293 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.7E-30 | 215 | 288 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.71E-9 | 1035 | 1099 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 8.9E-10 | 1071 | 1205 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.97E-8 | 1073 | 1192 | No hit | No description |
SMART | SM00248 | 11 | 1073 | 1102 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF48403 | 1.71E-9 | 1128 | 1193 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 10.1 | 1134 | 1206 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 160 | 1134 | 1166 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 830 | 1174 | 1203 | IPR002110 | Ankyrin repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1311 aa Download sequence Send to blast |
MERHVGQISV EGLPFIQHQF FPGGGGIPQL HPNGRGVSAV DRSSELPWST GQTGSNWNYC 60 GLSDNAERAI HRDDWNANSW RLDGYTLNAQ RVSRAPDGTG SESSKNLTSG ENEHRSRGAD 120 LGLQLDIRAA GTPEANHPVI HIDDDESEVQ GQSLFGRHTP SPPSNEPNPY NRGNDSPEDD 180 GPLSLKLGGS SYAYVENGAG KRPRSSSPPS QIPTCQVDGC TADLSKAKDY HRRHKVCETH 240 SKASTAQVSR VTQRFCQQCS RFHALDQFDE GKRSCRRRLA GHNKRRRKTQ PDAPAPRVED 300 QAGVNNTDIM TLLGLLSQLK GPLDQASAAT SERDILLQCL RQAGNLNLPN SSLEGLSRAP 360 PSWSQLTRNS DPAQPPIDPR LLAAQLAAHA PPATLPQQDA ITMLLQNNLK QAARIAQENM 420 YNRVGFNGNM NGVPSPYAAL NADASASYGV PQVNNERTSS AAGFSLPLSV RVPGSVPGNV 480 VPAQLLASVA LSLQQSLAAQ TASQDNHLAA NGYGTSLPTA HRGNPDQSPV DTRNFPHQRF 540 ARHEDNDATV HSQVGMQRQA SQSGASHFHK RPFLESQKSQ PPLQRPSIDL QQPLPSEQCS 600 DTSETGSGSG SGSGSGSGSG SGHQSPGTPN RESEHNRISF KLFNKHPTQF PDGLRSKINE 660 WLSHRPTDME GFIRPGCIIL TIFLSMPKFA WAELISDLPG SLQRLLSTGC EFWCTGRMLV 720 QVEQQTVLVE DGEIVACKTS DPFESPYLLS VRPLAVVPGQ QNRLIVKGFN LTTAATRLLC 780 AFRGQYFSAE VHHQHHSDVE SVASVDETED TDDTLDRLVE NDTVSGYEKN ASLDLVDGES 840 SIDDVSYRPS SSSAVPEASE VARVSVNDTD ASEQEDSAEG GEVADNDINF DYYSRSSVST 900 SLFSSQAICD LDTSVLPSAM PAGGFGRCFI EVDQDSLVGN WKPVIVADKP VAAEICTLED 960 EIEMAAGFAE IRAKQYGLDP SLVLYCTALA RLAEEEDVTQ FLNELGWFFQ RSYYGNLNFS 1020 LPTTQASFTK LEQLLVFSVE RNWCAVVRKL LDIAFETGDW EATFMVLSEM SQEGSSLLHR 1080 AVRNKKRPMV ELLLGFAPSF LAGINDSDVE SFKRKLEFRL KWSSIYKPDM RGPGGLTPLH 1140 IAASIHGAED IVDALTTGPS QDALHAWLHK KDDSGATPLD LAKAGGNMKS VQVVRAKLAK 1200 IENPDSIAID IAAGWDHRRA ESIVQAMELS QRRASEGIGA TRSDETPVCR EVDFARLPRD 1260 VCGVKGAMYR PFLVSIMGIA CICVCVCLLL RGPQNVLPLF TWSGLEQGKE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-32 | 206 | 288 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16481 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF016495 | 0.0 | EF016495.1 Physcomitrella patens SBP-domain protein 10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393534.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A2K1JIB7 | 0.0 | A0A2K1JIB7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S313_76V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 4e-38 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_18960V3.3.p |