PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c14_18250V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 439aa MW: 48713 Da PI: 6.3283

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_18250V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.1	5.5e-14	308	404	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklk..kplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtse........ssstcp 80 Wt+ ev aLi++r em+e+++r+k+k + W + ++m +gf++s++ Ck+k + l ++ykk +e +k+ +++ +s++c+ Pp3c14_18250V3.3.p 308 WTNCEVEALIALRGEMHEEFERNKQKqgVNTWNKLHARMlgVCKGFRKSANACKKKYSILYNEYKKDRECAKDINNDafvagglpRSKKCA 398 *******************976553389*****9999*********************9988887754322222222688999 PP trihelix 81 yfdqle 86 +fdq++ Pp3c14_18250V3.3.p 399 FFDQMD 404 999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54695	1.78E-5	1	53	IPR011333	SKP1/BTB/POZ domain
Pfam	PF00651	8.7E-5	1	53	IPR000210	BTB/POZ domain
Gene3D	G3DSA:3.30.710.10	6.9E-6	2	54	No hit	No description
Pfam	PF13837	4.1E-11	306	404	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MTPQELKVFV TFLYTGTISN NISLECMPTF FRAAEKYKVQ FLAEVCEDTL VSNLSRQNAI 60 STFDIVKKHC SSAVRESVLV KAMKMGEIST YDEYKHYTQK DPGLLLELYE LLSERIGPLL 120 AKRRRISTDI GTSEQDGVNN AFILYDGCDG KSDSDDESSE DHLRADEREM KPENEIASGA 180 VMLLNGSSRD GGNGCSSAGG GVFWQGGQPI PPQHGRTYSA GYDRAPGPRP TYDGQMMSPA 240 YVVPPYLSPM HMGGSLPRGG FVGAGAQGAL GMMERPVGGD ELMVQDTRGK KLPVEAQTKI 300 EGRRGQNWTN CEVEALIALR GEMHEEFERN KQKQGVNTWN KLHARMLGVC KGFRKSANAC 360 KKKYSILYNE YKKDRECAKD INNDAFVAGG LPRSKKCAFF DQMDMWYQNR PRLKIDANQG 420 EHLESPCTSA DDVDLKEE*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MTPQELKVFV TFLYTGTISN NISLECMPTF FRAAEKYKVQ FLAEVCEDTL VSNLSRQNAI  60
STFDIVKKHC SSAVRESVLV KAMKMGEIST YDEYKHYTQK DPGLLLELYE LLSERIGPLL  120
AKRRRISTDI GTSEQDGVNN AFILYDGCDG KSDSDDESSE DHLRADEREM KPENEIASGA  180
VMLLNGSSRD GGNGCSSAGG GVFWQGGQPI PPQHGRTYSA GYDRAPGPRP TYDGQMMSPA  240
YVVPPYLSPM HMGGSLPRGG FVGAGAQGAL GMMERPVGGD ELMVQDTRGK KLPVEAQTKI  300
EGRRGQNWTN CEVEALIALR GEMHEEFERN KQKQGVNTWN KLHARMLGVC KGFRKSANAC  360
KKKYSILYNE YKKDRECAKD INNDAFVAGG LPRSKKCAFF DQMDMWYQNR PRLKIDANQG  420
EHLESPCTSA DDVDLKEE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	125	KRRRI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.561	4e-35	gametophore

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395616.1	0.0	uncharacterized protein LOC112291890
TrEMBL	A0A2K1JIC6	0.0	A0A2K1JIC6_PHYPA; Uncharacterized protein
STRING	PP1S48_17V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c14_18250V3.3.p