PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c14_17330V3.5.p

Common Name

PHYPADRAFT_162859

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bZIP

Protein Properties

Length: 306aa MW: 33576.7 Da PI: 4.8007

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_17330V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.5	5.2e-12	123	180	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr rr+ +NR +A+rsRqRK+++++eLe ++L eN +L +l+ +++++kl+ e Pp3c14_17330V3.5.p 123 KRKRRMSSNRASAQRSRQRKQERLDELEILTAQLRLENATLSRRLKIAEQLAKKLELE 180 9**********************************************99999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-9	119	183	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.105	121	184	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-9	123	177	No hit	No description
Pfam	PF00170	1.5E-9	123	180	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.61E-8	123	172	No hit	No description
CDD	cd14702	3.59E-16	124	172	No hit	No description
PROSITE pattern	PS00036	0	126	141	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MPPDSPDLSD DVLAGINIDY STIVKKSDAE KTKDIGSDAL PLTGSLSTWF DCIQDDVCIV 60 TEGAPTKSGY FAAKSSSSQD ALRLVEAAPE SRKAFKTAAA KDQSYSQHVS KMDDEAPVLI 120 DEKRKRRMSS NRASAQRSRQ RKQERLDELE ILTAQLRLEN ATLSRRLKIA EQLAKKLELE 180 KNELAVKVEE LMKELDSARH PRAQADSGEL SEGKDVNSGI CHMVDGGLIS PDACIKLEIS 240 SKGSPPTAST FGAKKRNFSC IDMSRGFFQE LYDEIDSDQF DASISGVPVL LQEQWYGSFT 300 ECLNA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.1246	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394730.1	0.0	light-inducible protein CPRF2-like
Refseq	XP_024394731.1	0.0	light-inducible protein CPRF2-like
Refseq	XP_024394732.1	0.0	light-inducible protein CPRF2-like
TrEMBL	A0A2K1JI59	0.0	A0A2K1JI59_PHYPA; Uncharacterized protein
STRING	PP1S48_101V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c14_17330V3.5.p
Entrez Gene	5924602

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]