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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pp3c14_16990V3.5.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family | ARF | ||||||||
| Protein Properties | Length: 770aa MW: 85720.3 Da PI: 8.8419 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 80.1 | 2.2e-25 | 137 | 238 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+a++L++gD v+F+
Pp3c14_16990V3.5.p 137 FCKTLTASDTSTHGGFSIPRRAAEKVfppldyaQIPPAQ--ELKARDLHDQEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDAVLFT- 224
99*****************************97766665..8************************************************. PP
-SSSEE..EEEEE-S CS
B3 85 dgrsefelvvkvfrk 99
++++++l ++++r+
Pp3c14_16990V3.5.p 225 -RDNKGQLQLGIRRQ 238
.5689999****997 PP
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| 2 | Auxin_resp | 115.5 | 4.6e-38 | 265 | 346 | 3 | 83 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aa+t+s F+++YnPr+s+seFv++v+k++ka+ +vsvGmRf+m fete+ss rr++Gt++g+ dldp+rWpnS+WrsLk
Pp3c14_16990V3.5.p 265 YAAATSSRFTIFYNPRQSPSEFVIPVAKYQKAIChLQVSVGMRFRMVFETEESSVRRYMGTITGMGDLDPIRWPNSHWRSLK 346
6899****************************9868********************************************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 3.53E-47 | 126 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.3E-42 | 130 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 9.58E-24 | 136 | 237 | No hit | No description |
| PROSITE profile | PS50863 | 13.07 | 137 | 239 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.2E-23 | 137 | 238 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.6E-23 | 137 | 239 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 9.6E-34 | 265 | 346 | IPR010525 | Auxin response factor |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009725 | Biological Process | response to hormone | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 770 aa Download sequence Send to blast |
MYLCNERLPS VGPSVGSMAQ PAEKVEKRSL NSELWHACAG PLVLLPPVGS RVVYFPQGHT 60 EQVAASMQKE VDAHIPNYPN LPSRLVCLLD NVTLHADIET DEVYAQMTLI PVPPTNEKDA 120 HMSPDIEMRS RQPTEYFCKT LTASDTSTHG GFSIPRRAAE KVFPPLDYAQ IPPAQELKAR 180 DLHDQEWHFR HIYRGQPRRH LLTTGWSVFV SAKRLQAGDA VLFTRDNKGQ LQLGIRRQNR 240 QQRVMPSSVL SSDSMHIGVL AAANYAAATS SRFTIFYNPR QSPSEFVIPV AKYQKAICHL 300 QVSVGMRFRM VFETEESSVR RYMGTITGMG DLDPIRWPNS HWRSLKVGWD ESTAGERKKR 360 VSLWDIEPLT FPYVLCPQPL AFRAKRPRGG RDEETDSMLK KSSFWSGENS TDALGRLTFR 420 TPSLDSWMRP KQPGLPMQEN EHYRALEAAA LEEIRTTSTA KNPMSRVQSS IPSSQMQFQP 480 PHVLRQSSQH GELHMPEASG PLLQLSSSRP QSPFEVGINM PQCSGYSEGK IHMASSLSAS 540 ESFPLHSMLG RTHLGCDTVQ VTHVIRPGKS AQQNLSGAAI HGSSAVVRDP QVSPSWYPPN 600 RDLNQYDVSV RMNQLDTSPT SRNPGSFTFP QQGEGIGQSN LAALPAPTSS FMYRESGQAQ 660 DLVQSDRRLL FGVSIEQQPL GDSHSVTSRH PQTFVKNKDA QSRFPGNIML QGSYCPSTTA 720 DIPTVGGVVL DKIGVFQRCA PWSIMSPAPM RTFTKVRLSR EDFCIICMI* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 1e-161 | 30 | 367 | 51 | 388 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ppa.6039 | 0.0 | gametophore| protonema | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. {ECO:0000269|PubMed:16107481}. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024395063.1 | 0.0 | auxin response factor 6-like isoform X6 | ||||
| Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
| TrEMBL | A0A2K1J4P6 | 0.0 | A0A2K1J4P6_PHYPA; Auxin response factor | ||||
| STRING | PP1S48_147V6.1 | 0.0 | (Physcomitrella patens) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G30330.2 | 0.0 | auxin response factor 6 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Pp3c14_16990V3.5.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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