PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_16620V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 423aa    MW: 45579.4 Da    PI: 5.5774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_16620V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.3e-07292333955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r RR+ri ++   L+  +P       +K++ a++L +A++Y+k Lq
  Pp3c14_16620V3.1.p 292 ARHRRERISDRVRVLQHFVPGG-----TKMDTASMLDEAIHYVKFLQ 333
                         699*****************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.443283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-7285331No hitNo description
Gene3DG3DSA:4.10.280.106.3E-13286341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-14287344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSLTFRADDC NELPSMENWL NAGADWNEHH GIVDVDATAT APLFYHTAEA STTSGEDSLF  60
DALKKGQEAI STHPTFLKLD TLELCKQNPD AVLVRTGSSS MVDSSSNEVD VSDHANSLPS  120
TGMLVSNLLD RTGSLDESGL YMEADSPRGP LSPAALQLGK SPKGVAIKRS FEDASEASWM  180
PAAEATHIRA RKSAKQQLPK NVALSQEDLQ ASAAAVPYPP FVAMASSGEM APLAIRSGVA  240
PAFVPASAAN VPPLLFPTPL TLPNVPSMEE IAQSRPKRRN VRISKDPQSV AARHRRERIS  300
DRVRVLQHFV PGGTKMDTAS MLDEAIHYVK FLQQQLQTLE QIGNMSDPRF MAQPGGPMMM  360
PQMGAMNAVS PLDLNCAVYQ SYPGTSVVHP ASQPPSQWPN TRPTSPFCSQ GFQDSAQEQF  420
CH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.12530.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395722.10.0transcription factor BPE-like
TrEMBLA0A2K1JI260.0A0A2K1JI26_PHYPA; Uncharacterized protein
STRINGPP1S48_203V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-26bHLH family protein