PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_15980V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 800aa    MW: 87352.5 Da    PI: 6.224
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_15980V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.3e-21114169156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t+ q++e+e lF+++++p+ ++r++L+k lgL+ rqVk+WFqNrR+++k
  Pp3c14_15980V3.2.p 114 KKRYHRHTPRQIQEMEMLFKECPHPDDKQRQQLSKDLGLEPRQVKFWFQNRRTQMK 169
                         688999***********************************************998 PP
2START211.33.5e-663105312206
                         HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
               START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                         la  a++elv++a+aeep+W ++     ++n+de++++f+++ +      + ea r++++v m+ ++lve+l+d   qW  +++    +a 
  Pp3c14_15980V3.2.p 310 LAMMAMEELVRMAQAEEPLWLSMDsgkAQLNYDEYMRQFPRGIGmrpsgLKPEATRETALVMMNGVNLVETLMDAT-QWMDMFPcmvsRAL 399
                         566799******************9999*************999*****9**************************.************** PP

                         EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
               START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                         t++v+s+g      galqlm+aelq+lsplvp R+ +f+Ry++q+ +g+w++vdvSvds +++p  +s++R++++pSg li++++ng+ kv
  Pp3c14_15980V3.2.p 400 TVDVLSTGvtgnrnGALQLMYAELQVLSPLVPtREIYFLRYCKQHAEGVWAVVDVSVDSLRDNP-PPSLMRCRRRPSGVLIQDTPNGYAKV 489
                         ****************************************************************.7************************* PP

                         EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         t veh+++++r +h ++r lv++g+a+ga++w+atlqrqce+
  Pp3c14_15980V3.2.p 490 TCVEHMEYDDRAVHRMYRELVNTGMAFGAQRWLATLQRQCER 531
                         ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-2393169IPR009057Homeodomain-like
SuperFamilySSF466895.43E-2097171IPR009057Homeodomain-like
PROSITE profilePS5007117.184111171IPR001356Homeobox domain
SMARTSM003896.2E-20112175IPR001356Homeobox domain
CDDcd000863.04E-19113171No hitNo description
PfamPF000463.9E-19114169IPR001356Homeobox domain
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PROSITE profilePS5084846.779300534IPR002913START domain
SuperFamilySSF559615.38E-37301533No hitNo description
CDDcd088754.74E-131304530No hitNo description
SMARTSM002342.7E-59309531IPR002913START domain
PfamPF018523.1E-56311531IPR002913START domain
Gene3DG3DSA:3.30.530.205.0E-5404530IPR023393START-like domain
SuperFamilySSF559611.32E-24553791No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MRLGGVTVQV PPNGNLGNLG RSFGELGGMP TGAMAPPRQI PPLAMPRPPP KHYSSPSLSL  60
GPPTGLDGQR EVSQTADNEQ QQKNKEEEYE SRSGSDNMEG GSGDEDPDNN HPRKKRYHRH  120
TPRQIQEMEM LFKECPHPDD KQRQQLSKDL GLEPRQVKFW FQNRRTQMKA QTERAENSML  180
RAENEKVRSE NLIMREALKN PQCPHCGGPA TVGEMTFDEQ QLRIENVRLK EELDRVSALA  240
AKYLGRPITP MAPLALPSSS LDLQVGGGSS FGGMHPTPGN LDLVAGPSVA DVATRPGGLT  300
EAEKPMVVEL AMMAMEELVR MAQAEEPLWL SMDSGKAQLN YDEYMRQFPR GIGMRPSGLK  360
PEATRETALV MMNGVNLVET LMDATQWMDM FPCMVSRALT VDVLSTGVTG NRNGALQLMY  420
AELQVLSPLV PTREIYFLRY CKQHAEGVWA VVDVSVDSLR DNPPPSLMRC RRRPSGVLIQ  480
DTPNGYAKVT CVEHMEYDDR AVHRMYRELV NTGMAFGAQR WLATLQRQCE RLASLLASNI  540
ASRDLGGVPS ASGRRSMLKL AQRMTNNFCA GVSASTVHTW TTLSGSGDDD VRVMTRKSVD  600
NPGEPHGIVL SAATSMWLPV SPARVFQFLR DERLRSEWDI LSNGGIVTEM AHIAKGQDPG  660
NSVSLLRVNA MNSNQSNMLI LQESCTDVSG SLVIYAPVDI PAMNLVLQGG DPAYVALLPS  720
GFAILPDGPG GERGSLGVDQ GSQLTESSRG TGSLLTVAFQ ILVSSIPSAR LSLESVATVN  780
NLISCTVQRI KSALLVEDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.182641e-98protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394838.10.0homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_024394839.10.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLQ147S40.0Q147S4_PHYPA; Class IV HD-Zip protein HDZ43
STRINGPP1S209_10V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14515136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]