PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_14040V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB
Protein Properties Length: 1059aa    MW: 114153 Da    PI: 7.3198
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_14040V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-1554100148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEde l +av+ + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  Pp3c14_14040V3.1.p  54 KGGWTPEEDETLRRAVQCFNGKNWKKIAEFFT-DRTDVQCLHRWQKVL 100
                         688****************************9.************986 PP
2Myb_DNA-binding58.61.5e-18106152148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd+++ ++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
  Pp3c14_14040V3.1.p 106 KGAWTKEEDDRIMELVNKYGAKKWSVIAQNLP-GRIGKQCRERWHNHL 152
                         79******************************.*************97 PP
3Myb_DNA-binding57.72.6e-18158202147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT++Ed+ l++a++++G++ W+ Ia+ ++ gRt++++k++w++ 
  Pp3c14_14040V3.1.p 158 REAWTQQEDLALIRAHQLYGNK-WAEIAKFLP-GRTDNSIKNHWNST 202
                         789*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.42849100IPR017930Myb domain
SMARTSM007173.5E-1353102IPR001005SANT/Myb domain
PfamPF002497.3E-1454100IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-1555110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-2256112IPR009057Homeodomain-like
CDDcd001674.79E-1257100No hitNo description
PROSITE profilePS5129432.127101156IPR017930Myb domain
SuperFamilySSF466894.67E-32103199IPR009057Homeodomain-like
SMARTSM007174.9E-17105154IPR001005SANT/Myb domain
PfamPF002491.1E-17106152IPR001005SANT/Myb domain
CDDcd001673.36E-15108152No hitNo description
Gene3DG3DSA:1.10.10.602.3E-26113159IPR009057Homeodomain-like
SMARTSM007172.5E-18157205IPR001005SANT/Myb domain
PROSITE profilePS5129424.045157207IPR017930Myb domain
PfamPF002491.1E-16158201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-24160207IPR009057Homeodomain-like
CDDcd001679.73E-14160200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1059 aa     Download sequence    Send to blast
MASLIAKGKS CNSNDNVQQR SSACSSAPES DEDTSHHLPP VHGRTGGPTR RSSKGGWTPE  60
EDETLRRAVQ CFNGKNWKKI AEFFTDRTDV QCLHRWQKVL NPDLVKGAWT KEEDDRIMEL  120
VNKYGAKKWS VIAQNLPGRI GKQCRERWHN HLNPSIKREA WTQQEDLALI RAHQLYGNKW  180
AEIAKFLPGR TDNSIKNHWN STMKKKVDPL TANDPISRAL AAYQAQQEQS MNSGSGAGQV  240
DSGSIGGRTG PPMSETTTSS DPSRHNSNTR GLGRTSHYVE QDTKSTGSAP PPPYPDIYPN  300
RGKDQQRNAS HLQPKKEESD HDLIGQSLGF SGWSSGQLPV YSGGFSGVSL GTSSLSNSVT  360
EQLVPSVQHK RAMSNIELTR IASFSNSFPR IPAPESSSQA YRSSSMSVPL PDLGSLFASS  420
HMPMAAHNDT QPLSSFNGTG VPPGEETLAM MGSKQNYEPL RRCNLPPSQP SEGDAAFEDS  480
GASVRCDSQM AEPMDKAMDQ DVSEFPSDNL LRDSSEAVNE YQSQSPMLTE EDLEDKGDSS  540
RVQDRDGLFY EPPRIVDPPF MNYDLVSSLN AYSPLGVRQM IMPAGNCITP PNYLQSPFQG  600
KSPQSKLRSA AKSFSGSPSI LRKRPRQILV PSRTGTTGDK LDTKFSEAHT SLGKGDASGA  660
TAGGNSLKTP AGASQSSLAN KPSKAAGSQQ ACLARTALFV SPASKPSNRV DNEVSRKTDN  720
QSQECTTDSN GGGGAGGASL PIRDGRQGSA CGNVSRDNIG VKINKRGRSL GSNLYRGVSS  780
ERQNGTQVCK EGSVLTEQQQ NGQNGHEEPR PSCDTTAVGS GDTIGGSISG KVSEKREFSS  840
PGNAATLSSW GSVTCAMAAC FSPGVTIFQH TPGKDWLQDL DTANIFASPR FPSPRFASPI  900
WRSPWKLDPF PSAQKEGALS FMDGLEVPLE DGLDDALGLM RQNNEHNTPA YSEAEEVLAK  960
QPSVQHVPSP FSGYCLRTSS SRKVHDMKEN RRGLVENDGH GSTFVNWLLP SPEHGITGTP  1020
VRGASTLGLN AGGEDTHMLG GGGCEQFSPS MYLLKECR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-69542076159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-69542076159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1620626LRKRPRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1897860.0AF189786.1 Physcomitrella patens putative c-myb-like transcription factor (MYB3R-1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395733.10.0transcription factor MYB3R-1-like isoform X2
TrEMBLA0A2K1JHR00.0A0A2K1JHR0_PHYPA; Uncharacterized protein
STRINGPP1S36_43V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.24e-89myb domain protein 3r-4