PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_9880V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 658aa MW: 72394.7 Da PI: 6.3131 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 62 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp++ + r +lg+f+tae+Aa a++ a+++++g Pp3c13_9880V3.2.p 62 RYRGVRQRP-WGRYAAEIRDPNT---KERKWLGTFDTAEDAALAYDTAARSMRG 111 69*******.**********933...5*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.9E-30 | 62 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 62 | 119 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 62 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-20 | 62 | 119 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-35 | 62 | 125 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.91E-29 | 62 | 118 | No hit | No description |
PRINTS | PR00367 | 3.2E-9 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-9 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MVGKVQASIA GAHGKQSAHH AMVVPRSSHH TLVPEAVGRS RSVSNKPKST SIKRARKVQE 60 GRYRGVRQRP WGRYAAEIRD PNTKERKWLG TFDTAEDAAL AYDTAARSMR GVKARTNFVY 120 PSHETSLLSA AAALAAPYRN LQHSAQHQQV DVIAQETLGE VLMLSTAKNS HNYDWGNTQL 180 SFDEPSRKLF NVQATQKQPM VGYKLPGHGC RYVDRKIQPA SQLTCLPNTL HSNLQDQRAA 240 ILTSSLINDV EVDGFRISPG KQEQWHCVPG EHQQFRLDQF KRSPIVNSEL FVSRFCAAVS 300 QPFQVSRNDD IKIPSESVSP LSESSILCDE VPMKTSLSQA PRQLQFESEN SSGTLHQVVS 360 KYVDSSGPTA TIALEETSVG CVVMKSKECL LSTQVPCSDE SSSSTSAVSR FNTDTASSPT 420 TVAASSPGLF SLSSEVESTY SGPYSSEACH QPSAALMLNT SLCRNPDNLE SILPPSLLTN 480 WEYHDAPLHA SWVWDMPIPH TSASVTALHS TTTTSRADTV TKCDPHHNTW QNLCELPDTI 540 AQFLSCDSID SNVSQEQLLH RLCETESTIN HWKMNPEGVR KNSEGFNPMI DWGVSRGCQE 600 SSSAAHALTD ADATELCNDV YMLDNVHDAT NSTIIQCPLY DDEYVFQHLM EESTLNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 63 | 118 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392281.1 | 0.0 | uncharacterized protein LOC112290343 | ||||
TrEMBL | A0A2K1JLD8 | 0.0 | A0A2K1JLD8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S5_432V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 6e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_9880V3.2.p |