PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_9880V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 658aa    MW: 72394.7 Da    PI: 6.3131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_9880V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1862111255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +gr++AeIrdp++   + r +lg+f+tae+Aa a++ a+++++g
  Pp3c13_9880V3.1.p  62 RYRGVRQRP-WGRYAAEIRDPNT---KERKWLGTFDTAEDAALAYDTAARSMRG 111
                        69*******.**********933...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.9E-3062118IPR001471AP2/ERF domain
PROSITE profilePS5103221.79962119IPR001471AP2/ERF domain
PfamPF008471.2E-1162111IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2062119IPR016177DNA-binding domain
SMARTSM003801.9E-3562125IPR001471AP2/ERF domain
CDDcd000186.91E-2962118No hitNo description
PRINTSPR003673.2E-96374IPR001471AP2/ERF domain
PRINTSPR003673.2E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MVGKVQASIA GAHGKQSAHH AMVVPRSSHH TLVPEAVGRS RSVSNKPKST SIKRARKVQE  60
GRYRGVRQRP WGRYAAEIRD PNTKERKWLG TFDTAEDAAL AYDTAARSMR GVKARTNFVY  120
PSHETSLLSA AAALAAPYRN LQHSAQHQQV DVIAQETLGE VLMLSTAKNS HNYDWGNTQL  180
SFDEPSRKLF NVQATQKQPM VGYKLPGHGC RYVDRKIQPA SQLTCLPNTL HSNLQDQRAA  240
ILTSSLINDV EVDGFRISPG KQEQWHCVPG EHQQFRLDQF KRSPIVNSEL FVSRFCAAVS  300
QPFQVSRNDD IKIPSESVSP LSESSILCDE VPMKTSLSQA PRQLQFESEN SSGTLHQVVS  360
KYVDSSGPTA TIALEETSVG CVVMKSKECL LSTQVPCSDE SSSSTSAVSR FNTDTASSPT  420
TVAASSPGLF SLSSEVESTY SGPYSSEACH QPSAALMLNT SLCRNPDNLE SILPPSLLTN  480
WEYHDAPLHA SWVWDMPIPH TSASVTALHS TTTTSRADTV TKCDPHHNTW QNLCELPDTI  540
AQFLSCDSID SNVSQEQLLH RLCETESTIN HWKMNPEGVR KNSEGFNPMI DWGVSRGCQE  600
SSSAAHALTD ADATELCNDV YMLDNVHDAT NSTIIQCPLY DDEYVFQHLM EESTLNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2163118359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392281.10.0uncharacterized protein LOC112290343
TrEMBLA0A2K1JLD80.0A0A2K1JLD8_PHYPA; Uncharacterized protein
STRINGPP1S5_432V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.16e-22ERF family protein