PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_9170V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 758aa MW: 80631.6 Da PI: 6.329 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105 | 4.4e-33 | 413 | 467 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLHe+Fv+av+qLGG+e+AtPk++l++m+v+g+t++hvkSHLQkYRl Pp3c13_9170V3.1.p 413 KTRLRWTPELHEKFVDAVAQLGGPERATPKAVLRIMSVEGITIYHVKSHLQKYRL 467 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.476 | 410 | 471 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-30 | 411 | 467 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-17 | 412 | 468 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-24 | 413 | 467 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-8 | 415 | 466 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.4E-20 | 532 | 577 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MPTQMPPLLP TSAARQRSHS NSSSPLASPG MLQSLPPLGA QCPSQLFLPT SVGGVRGIQP 60 LARDATPPEQ PNYYSAVPGV RPSSWETSSP HVITSPSITA QYHPLNISKY TPPHVAAPTL 120 RNIHHGLAFV TLQEGSFPSF DIPSFHNLSA TYAQQWPSTN GQWVVTESSQ SAVPWPSSTI 180 SMGASSSSTG GSTAAAHAQL SALVPTNSCG LNFHCLRGGV TAATTDEGRG FSIIGRDDGT 240 GSGMRMELQE IGSGRGGDST SLEQYANSRL GITPEINAAN LCHPLQVLLE GASDQRILRD 300 SEGSSQTAEA SVNIPEWPEP NWMEIFTDPY DESVPLDTIN GRVFQAPANL PAPPPLIPAR 360 DLRTDWQHSG AVSEGSPGTS GTPTSVGASV GASVGVSAIA STTASTDEAA SVKTRLRWTP 420 ELHEKFVDAV AQLGGPERAT PKAVLRIMSV EGITIYHVKS HLQKYRLIPE TSEDARNDRK 480 RNDSSFGGMD INSSVFRNFH ISRRISHGFY FSTVWQYEKR LRCCDSSAWS LQMTQALQMQ 540 MEVQKRLHEQ LEIQRELQLR IEAQGQSLKM MFEAQTKASG AFGSHPDLSS MEHSEGGSDA 600 PNSQDAPAAQ SSHQVPETLS SPQDASGSSA SQEPSTKRAR VDVVPNPNLR MLHSKDTTTA 660 ATPKTELLHS CSAPPPPPPP DRTASCESSP QGSSPSRLAE GLSSSSLADG TPQTMAPMTT 720 DQGAGLTPQR HGTTSLQSCM PQQSGSMTLT SLQASVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-23 | 413 | 466 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-23 | 413 | 466 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-23 | 413 | 466 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-23 | 413 | 466 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-23 | 413 | 466 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-23 | 413 | 466 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-23 | 413 | 466 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-23 | 413 | 466 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-23 | 413 | 466 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-23 | 413 | 466 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-23 | 413 | 466 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-23 | 413 | 466 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12603 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392419.1 | 0.0 | uncharacterized protein LOC112290437 isoform X1 | ||||
TrEMBL | A0A2K1JL99 | 0.0 | A0A2K1JL99_PHYPA; Uncharacterized protein | ||||
STRING | PP1S52_33V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-48 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_9170V3.1.p |