PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_8880V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 866aa MW: 96672.9 Da PI: 8.9203 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.4e-09 | 167 | 211 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ Ed++l+ v+ + + W++Ia+++ + Rt+ qc r+q Pp3c13_8880V3.2.p 167 KPWTKAEDKKLLSIVQAHDMVEWAAIAEELDTQRTPAQCAIRYQR 211 69*****************************99**********96 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 219 | 265 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r +WT+eEde+l av+++G ++W ++a++m gR + qc srw k+l Pp3c13_8880V3.2.p 219 RSAWTPEEDEQLQAAVEKFGEKDWQSVAACME-GRLGSQCMSRWTKVL 265 789*****************************.***********9975 PP | |||||||
3 | Myb_DNA-binding | 50.6 | 4.6e-16 | 272 | 318 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrW +eEd +l+ av +G++ Wk Ia++++ gR++ qc++rw ++l Pp3c13_8880V3.2.p 272 RGRWLAEEDTRLKWAVSVYGPRGWKNIAAHVP-GRSDVQCRERWCNVL 318 89******************************.***********9975 PP | |||||||
4 | Myb_DNA-binding | 41.1 | 4.1e-13 | 326 | 366 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eEd +l ++v ++G ++W+++ +++g Rt++qc +w Pp3c13_8880V3.2.p 326 EWSPEEDAKLEELVVKYGRHRWAAVGAELG--RTDNQCFRHWK 366 7****************************8..**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0014 | 72 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-7 | 75 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.784 | 75 | 160 | IPR017877 | Myb-like domain |
CDD | cd00167 | 0.00518 | 124 | 159 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-7 | 132 | 170 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-14 | 143 | 214 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.361 | 161 | 213 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.0E-8 | 165 | 215 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 3.2E-15 | 169 | 230 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 171 | 221 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.03E-17 | 199 | 266 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.872 | 214 | 266 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 218 | 267 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.94E-12 | 221 | 265 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-16 | 222 | 268 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.87E-17 | 245 | 314 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.201 | 267 | 322 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-19 | 269 | 321 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-14 | 271 | 320 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 272 | 318 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.97E-11 | 274 | 318 | No hit | No description |
SuperFamily | SSF46689 | 2.44E-22 | 298 | 369 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 322 | 366 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.962 | 323 | 372 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-13 | 323 | 371 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.06E-11 | 326 | 368 | No hit | No description |
Pfam | PF00249 | 1.0E-11 | 326 | 366 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 866 aa Download sequence Send to blast |
MQRRAVSLVE YQKACTRKFC GFTEVVNSSV ELIATKPASK KKSGEFKVRG PPENPDVEIY 60 RKLQSQLPAE FNVKKWTKKE TQALSKGVRQ QLQEIRLRAM MEGWDSDEEG QDFDEQMRTI 120 GENEEELKKG LPFIDWNEVA RIYVSGRSAW ECKLQWENNE NPLLNSKPWT KAEDKKLLSI 180 VQAHDMVEWA AIAEELDTQR TPAQCAIRYQ RSLNAAILRS AWTPEEDEQL QAAVEKFGEK 240 DWQSVAACME GRLGSQCMSR WTKVLHPDRH RRGRWLAEED TRLKWAVSVY GPRGWKNIAA 300 HVPGRSDVQC RERWCNVLDP SVKIDEWSPE EDAKLEELVV KYGRHRWAAV GAELGRTDNQ 360 CFRHWKLLHP EHKISFKKDM AIRRAALANN FVGREKERPD LGFQDFLPPP VAGEEEHNHP 420 ASPKSLTTST ENAVRKSGKR PSKKRKTPEL VSQSTDNFPT ETEVQAVVVD CADGSNSMPL 480 NSSNGAMRRQ AARPGGNAIK KRKLQVSTST DENILVEKEL QRAEGIASNG NQEVRVRSLK 540 KSRPKKAPKP VELSSKKMKS MELASETNDD LPIQTDLQII EVASADGSNV APLNSTKKSK 600 KRRSSNPGER AAKKRKTPEL VSAITENLLI EKDLQSVEVD SSNGNNAAPV NSVEESARIP 660 GSKLLCRRKK SPKRRVKTST KTRIPELALV LEEMLPIQNR VPSAGEVSGD GVSNDSMVTT 720 VEGARETSSV NGNYAQEPFV RGDTGNGGGA SDADLVEHRT NPILVSNVIC SPCNDAVKEK 780 RDEEDAELIV YTRRKNRVSS CSRTCSENTG AVELSATGTV TSGVGQDGRV HETDTTAGEL 840 IQEPILRRSR KKLTLPDFLY SGSKD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-29 | 118 | 371 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-29 | 118 | 371 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 600 | 615 | KRRSSNPGERAAKKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392638.1 | 0.0 | uncharacterized protein LOC112290523 | ||||
TrEMBL | A0A2K1JLB9 | 0.0 | A0A2K1JLB9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S52_54V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 8e-96 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_8880V3.2.p |