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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Pp3c13_6470V3.1.p | ||||||||
| Common Name | PpVNS1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family | NAC | ||||||||
| Protein Properties | Length: 374aa MW: 42417 Da PI: 6.6746 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 163.5 | 7.9e-51 | 8 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87
p+GfrFhPtdeelv +yL+ kv + + + i+e+d+yk+ePwdL++ + +++++wyfFs++dkky+tg+r+nrat++g+Wkatg
Pp3c13_6470V3.1.p 8 PVGFRFHPTDEELVGYYLHGKVGRFQRDQ--LIQELDLYKIEPWDLHEvcrigdDAPEHQSDWYFFSHKDKKYPTGNRANRATTAGFWKATG 97
89********************9887544..8**************854655554444777******************************* PP
NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl
Pp3c13_6470V3.1.p 98 RDKPIHT-QRQVIGMRKTLVFYKGRAPNGQKTDWIMHEFRL 137
*******.999****************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 1.31E-54 | 5 | 160 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 54.867 | 7 | 160 | IPR003441 | NAC domain |
| Pfam | PF02365 | 7.7E-27 | 8 | 137 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 374 aa Download sequence Send to blast |
MNNKAPIPVG FRFHPTDEEL VGYYLHGKVG RFQRDQLIQE LDLYKIEPWD LHEVCRIGDD 60 APEHQSDWYF FSHKDKKYPT GNRANRATTA GFWKATGRDK PIHTQRQVIG MRKTLVFYKG 120 RAPNGQKTDW IMHEFRLDDC PGASPNYESD GWVVCRVFRK MKNFKTKSQE TSCSLEEDQV 180 LLPELMSHSE GGGGPSSQGG EVQYNPHLHH FSFTCKQELS VEDYRTPISS DPFMENLHLH 240 ELHRSIEPSC HQNYLPPSVS STFRSLQPAC TSGRSSRDYA EYSLVPFPLE STSLRDFDDA 300 RSSVTQDGSS LTALAHHNDA EYWMLDGGIS KAGARRDQTL AAVTYHVDLK SRQSSDNSSA 360 STNHEGFGHL WNV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 2e-45 | 7 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-45 | 7 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-45 | 7 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-45 | 7 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-45 | 7 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-45 | 7 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-45 | 7 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-45 | 7 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-45 | 7 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-45 | 7 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-45 | 7 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-45 | 7 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 2e-45 | 7 | 160 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-45 | 7 | 160 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ppa.14709 | 0.0 | protonema| sporophyte | ||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AB898081 | 0.0 | AB898081.1 Physcomitrella patens PpVNS1 mRNA for NAC transcription factor PpVNS1, complete cds, ecotype: Gransden 2004. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024392098.1 | 0.0 | NAC domain-containing protein 76-like | ||||
| Refseq | XP_024392099.1 | 0.0 | NAC domain-containing protein 76-like | ||||
| Refseq | XP_024392101.1 | 0.0 | NAC domain-containing protein 76-like | ||||
| TrEMBL | X5II81 | 0.0 | X5II81_PHYPA; NAC transcription factor PpVNS1 | ||||
| STRING | PP1S182_37V6.1 | 0.0 | (Physcomitrella patens) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G12260.1 | 2e-74 | NAC 007 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Pp3c13_6470V3.1.p |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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