PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_4270V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 249aa    MW: 26994.4 Da    PI: 4.6429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_4270V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.32e-184795355
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ykGVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aaka++aa  +l+g
  Pp3c13_4270V3.1.p 47 YKGVRLRT-WGKWVSEIREP---NKRSRIWLGSFPTAEMAAKAYDAAVVCLRG 95
                       9****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-3546109IPR001471AP2/ERF domain
PROSITE profilePS5103222.82746103IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2146104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-3146104IPR001471AP2/ERF domain
CDDcd000183.06E-3147104No hitNo description
PRINTSPR003673.6E-94758IPR001471AP2/ERF domain
PfamPF008473.4E-114795IPR001471AP2/ERF domain
PRINTSPR003673.6E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVEKAASLPM YGKRGGNLLA PLKKSSSCIA KKSSSTPDKS ACENRAYKGV RLRTWGKWVS  60
EIREPNKRSR IWLGSFPTAE MAAKAYDAAV VCLRGRSATL NFPDCPPPLI PQSRTPRDVQ  120
AAAAAAAAAC APPAFADDKH PPMATVTFES SKLAHPSLSS SSDDESQESD DAYDGEDAAP  180
ALMSPTTHME IAPVEMWVNT EFGETKSAHD EFEFLAEFML DSEPPMLEIP SIVAEDEVIY  240
EPFLWSYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1641103972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.29310.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392192.10.0ethylene-responsive transcription factor ERF038-like
TrEMBLA0A2K1JKP80.0A0A2K1JKP8_PHYPA; Uncharacterized protein
STRINGPP1S133_11V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.13e-29ERF family protein