PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_3830V3.1.p
Common NamePHYPADRAFT_166250
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 363aa    MW: 39976.4 Da    PI: 4.7775
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_3830V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.5e-10142185248
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                        g+kGVr++ k   +++eIr p++n   k+++lg+f t  eAa a++a
  Pp3c13_3830V3.1.p 142 GFKGVRQRTKVRGYLVEIRPPRWN---KTIWLGTFNTDAEAAGAYDA 185
                        89*******9999*******9995...******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-5142185IPR001471AP2/ERF domain
PROSITE profilePS5103212.233142199IPR001471AP2/ERF domain
SMARTSM003802.1E-5142205IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-9142199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-14143200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MPDNTDALSQ HSRDVDVTIL QQSVQGWASG CFCGGIKSEF FQCWTCSGDS LGQKVGFKPP  60
QDELPWGLTQ FPAAPMTQTV AATDNVALNP VESNAASTTA IPLASRVSGV DSTRLHDASP  120
ALNIRRQRGR PPNGSRQGPR HGFKGVRQRT KVRGYLVEIR PPRWNKTIWL GTFNTDAEAA  180
GAYDAGVFYT KKKTRFNFPS LVKTFIPLPE NLAFDRPSDA NDIKEFVKKQ AVQAAKDVKN  240
MNLQPNTNSS SVASNRDQMG MISADTADTA DQESASNNSL TEEVIWSPEF IPSDFSLDEN  300
FQPQPPFIPS FDEFAEQSMV QNYINLQQRN QIGSATSSAS FELKEDDVIA FNLDYISYNE  360
LD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.124180.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393284.10.0ethylene-responsive transcription factor ERF036-like
TrEMBLA9SRF70.0A9SRF7_PHYPA; Predicted protein
STRINGPP1S107_32V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.17e-11related to AP2 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]