PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_3710V3.2.p
Common NamePHYPADRAFT_82857
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 436aa    MW: 48670.9 Da    PI: 4.7856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_3710V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1679131153
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                        s+y GVr+++  ++WvAeIr+  ++   +  k+++lg+f+++e+Aa+a +aark l
  Pp3c13_3710V3.2.p  79 SKYFGVRFRPDLQKWVAEIRVaEWK---SvdKKVWLGTFDSEEGAARAVDAARKLL 131
                        7899*****************6433...345**********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.10E-1479127No hitNo description
SuperFamilySSF541712.94E-1079131IPR016177DNA-binding domain
PfamPF008472.1E-1079129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-1480136IPR001471AP2/ERF domain
SMARTSM003802.6E-780146IPR001471AP2/ERF domain
PROSITE profilePS5103215.5480142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MTVDLHYYAR NEGTSDIQDM RGEFQLNRNV KKEMRFSSTI QHSSDFPPTL LDARRAMAEP  60
GDLSYFGLSP KKSRAKESSK YFGVRFRPDL QKWVAEIRVA EWKSVDKKVW LGTFDSEEGA  120
ARAVDAARKL LKCKKKRGFN IPSAELDAYS EKIPSNLKLT NLLDDSMFKE VTLFVKKRAQ  180
EYASSFTSGQ VFTSSDYQVQ PDLSYFDVNL LQRIGDPLQE EVSCLASQSS ALHGLELYND  240
QTCAVIAASY PCSCFSSLNN FSPPSCVSDG RCSSLDASNE AQENLLQAYE DACYRRGAGG  300
SDWQNFGSYS SPNSNVESQH ETDTTYDHVL LEEQGLGCSG NMRNAGHSSD FWDVIDECMF  360
DNQVHWGRHH SAMDLTTGDE MQPCVDIPMP NVILSPQYQF TTSNVNTSTD SQFNNSQTTV  420
SHALLNSTEF SQAVC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393128.10.0uncharacterized protein LOC112290736
TrEMBLA9SRG00.0A9SRG0_PHYPA; Predicted protein
STRINGPP1S107_45V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.15e-07ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]