PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_3710V3.1.p | ||||||||
Common Name | PHYPADRAFT_82857 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 436aa MW: 48670.9 Da PI: 4.7856 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.2e-16 | 79 | 131 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkkl 53 s+y GVr+++ ++WvAeIr+ ++ + k+++lg+f+++e+Aa+a +aark l Pp3c13_3710V3.1.p 79 SKYFGVRFRPDLQKWVAEIRVaEWK---SvdKKVWLGTFDSEEGAARAVDAARKLL 131 7899*****************6433...345**********************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.10E-14 | 79 | 127 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-10 | 79 | 131 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-10 | 79 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-14 | 80 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-7 | 80 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.54 | 80 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MTVDLHYYAR NEGTSDIQDM RGEFQLNRNV KKEMRFSSTI QHSSDFPPTL LDARRAMAEP 60 GDLSYFGLSP KKSRAKESSK YFGVRFRPDL QKWVAEIRVA EWKSVDKKVW LGTFDSEEGA 120 ARAVDAARKL LKCKKKRGFN IPSAELDAYS EKIPSNLKLT NLLDDSMFKE VTLFVKKRAQ 180 EYASSFTSGQ VFTSSDYQVQ PDLSYFDVNL LQRIGDPLQE EVSCLASQSS ALHGLELYND 240 QTCAVIAASY PCSCFSSLNN FSPPSCVSDG RCSSLDASNE AQENLLQAYE DACYRRGAGG 300 SDWQNFGSYS SPNSNVESQH ETDTTYDHVL LEEQGLGCSG NMRNAGHSSD FWDVIDECMF 360 DNQVHWGRHH SAMDLTTGDE MQPCVDIPMP NVILSPQYQF TTSNVNTSTD SQFNNSQTTV 420 SHALLNSTEF SQAVC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393128.1 | 0.0 | uncharacterized protein LOC112290736 | ||||
TrEMBL | A9SRG0 | 0.0 | A9SRG0_PHYPA; Predicted protein | ||||
STRING | PP1S107_45V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 5e-07 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_3710V3.1.p |
Entrez Gene | 5932157 |
Publications ? help Back to Top | |||
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