PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_2780V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 87aa MW: 9611.04 Da PI: 8.5114 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00027 | 19 | 50 | 20 | 54 |
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksL 54 f eL +l + + +K +Ka+iL Av+ + +L Pp3c13_2780V3.1.p 19 FLELGAILESG---RPPKTDKATILSDAVRILTQL 50 66777777776...789*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.43E-7 | 18 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.1E-7 | 19 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
SREEICGGVG NKSCREKLFL ELGAILESGR PPKTDKATIL SDAVRILTQL RAEAQGLTES 60 NNQLRETIKD LKGTWNGLRI LVWWCN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.5860 | 1e-83 | gametophore| protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376913.1 | 2e-38 | transcription factor ILR3-like | ||||
Refseq | XP_024376915.1 | 2e-38 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 3e-21 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2K1JKG7 | 9e-55 | A0A2K1JKG7_PHYPA; Uncharacterized protein (Fragment) | ||||
STRING | PP1S229_67V6.1 | 8e-38 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_2780V3.1.p |