PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_24020V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 471aa    MW: 51383.9 Da    PI: 7.8853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_24020V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19293344155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr+++ +g+++AeIr        + +r++lg+f+tae+Aa+a++aa+ +++g
  Pp3c13_24020V3.2.p 293 PHYRGVRQRP-WGKFAAEIRN----SarQGQRVWLGTFDTAEQAARAYDAAAFEMRG 344
                         68********.*******999....33334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-19293352No hitNo description
PfamPF008471.7E-15293344IPR001471AP2/ERF domain
PROSITE profilePS5103224.118294352IPR001471AP2/ERF domain
SMARTSM003803.4E-35294358IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22294353IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-31294353IPR001471AP2/ERF domain
PRINTSPR003675.5E-11295306IPR001471AP2/ERF domain
PRINTSPR003675.5E-11318334IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MNIFSFASTM RSRGILKRKD TGLDCVIDEE VLQQPQQASL DAFRSYAVNR DPLAEFAVKR  60
LSNKELSAGC ETSSAAHHGA GYPLLKRARS EEIARFEEQK KPCHRAWLLA NQLRHSLGPN  120
FAETIGQVVK KEDGLTTTSS SRLAWSSQSP CNKISLAPES NAIDPHSFRV RAKEPNVWSD  180
KQNQYNPRGR PAPPLFDEPT TQPPLNANDS EGAGLHKEHL VDKSTAPPLA SALAKRIPLR  240
RTRRRFPEAD AMGITKPEQA SKPASIMNAH ISSTPQSGLF TQASQWKVER GTPHYRGVRQ  300
RPWGKFAAEI RNSARQGQRV WLGTFDTAEQ AARAYDAAAF EMRGYRALLN FPLEAALSEL  360
LPPPPPPPQL EKQILELKAS SIITNSYTED SEMIVIRTEC PSPPPAAADP IASSAGLELQ  420
DLGTDLLENL LSITHPELDS GPASPQPSFD GCLSFFADFG GGGVSPALLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26294359570ATERF1
3gcc_A2e-26294359570ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392171.10.0uncharacterized protein LOC112290277
TrEMBLA0A2K1JN300.0A0A2K1JN30_PHYPA; Uncharacterized protein
STRINGPP1S37_293V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-20ethylene responsive element binding factor 2