PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_23600V3.1.p
Common NamePpSTOP1
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 589aa    MW: 63710 Da    PI: 7.2418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_23600V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.7e-07408429223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++Cgk F+r  nL+ H+r H
  Pp3c13_23600V3.1.p 408 FCEICGKGFKRDANLRMHMRGH 429
                         6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-5404429No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5404429IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.157407429IPR007087Zinc finger, C2H2
SMARTSM003550.0026407429IPR015880Zinc finger, C2H2-like
PfamPF128743.0E-4408429No hitNo description
PROSITE patternPS000280409429IPR007087Zinc finger, C2H2
SMARTSM0035560457490IPR015880Zinc finger, C2H2-like
SMARTSM0035546495517IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MQGGNQQPAP SPTNDSLSTL AFLHHQLTQQ FSTSNLPNTP LLSSSLGFSM SGNAQDQSHT  60
HQNIQQQQIQ SMISGGGSRG HAQVGSRSGE SPGGLFQHLQ HGNRDSNLDQ HQFYNETTNQ  120
LFSENVLNQA SLVEQRVRSI TEHLSMLQDR IQQLQALVPL ISQLSHFQNE GNVLAQQQVA  180
SAAVVSITSQ LAMVAVDLLL QSGVNTGTQP NHSKEMHLSQ LLQNAANPNF SQQNAPRHDL  240
RAPHMSHWME KLLGGSFAAS EGVNAAITSG NGGIRFSGGG GNFPVLIDDV ENSGQQSLSG  300
AQQVGGNGSA GSMIHYPMSN MIGKDFGSIL DGKDRKPSDV LGSSSREGDS GANEFISVEL  360
RGVNAGLEDL DNDSRVDDEG SDSDNISPGS FDLVEMDATE ILAEHTHFCE ICGKGFKRDA  420
NLRMHMRGHG DVYKTAAALA RPDRGTQIPT SNASRRYSCP YVGCKRNKKH RKFQPLKTLL  480
CVKNHYRRSH CPKVLNCQKC STKKFSVVAD LKTHEKHCGR EKWLCSCGTT FSRKDKLVGH  540
IGLFVGHAPA MPLHDMEGGV GSNLIVDHHQ SPAEAFGLGS KSPMAFWE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.69031e-164protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8117790.0AB811779.1 Physcomitrella patens PpSTOP1 mRNA for STOP1-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392210.10.0uncharacterized protein LOC112290301
RefseqXP_024392211.10.0uncharacterized protein LOC112290301
RefseqXP_024392212.10.0uncharacterized protein LOC112290301
RefseqXP_024392214.10.0uncharacterized protein LOC112290301
RefseqXP_024392215.10.0uncharacterized protein LOC112290301
RefseqXP_024392216.10.0uncharacterized protein LOC112290301
RefseqXP_024392217.10.0uncharacterized protein LOC112290301
TrEMBLS6BP580.0S6BP58_PHYPA; STOP1-like protein
STRINGPP1S37_244V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-92C2H2 family protein
Publications ? help Back to Top
  1. Ohyama Y, et al.
    Characterization of AtSTOP1 orthologous genes in tobacco and other plant species.
    Plant Physiol., 2013. 162(4): p. 1937-46
    [PMID:23749850]