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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Pp3c13_23440V3.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family | G2-like | ||||||||
| Protein Properties | Length: 436aa MW: 47419.9 Da PI: 8.7458 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 108.2 | 4.4e-34 | 40 | 94 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vk+Ltl+h+kSHLQkYRl
Pp3c13_23440V3.1.p 40 KPRLRWTPELHERFVDAVNQLGGADKATPKSVMRIMGVKDLTLYHLKSHLQKYRL 94
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 10.51 | 37 | 97 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 3.7E-33 | 38 | 95 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 4.5E-24 | 40 | 95 | IPR006447 | Myb domain, plants |
| SuperFamily | SSF46689 | 1.97E-17 | 40 | 95 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 9.6E-9 | 42 | 93 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 1.2E-22 | 141 | 188 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene3D | G3DSA:1.20.58.60 | 6.8E-4 | 157 | 210 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 436 aa Download sequence Send to blast |
MAMYQMKKYS SLALAPHRHH QVSSYAPTLS TGEMNPVDPK PRLRWTPELH ERFVDAVNQL 60 GGADKATPKS VMRIMGVKDL TLYHLKSHLQ KYRLGKQLHR DSSVHEANKD VSHGSSDMLG 120 TSNGASDRPL TPTSQNSQDT MQITEAIRLQ MKVQRRLQEQ LEVHKNLQLR IEAQGKYLQT 180 ILEKAKETLA GHTSASPDLK AAHAELTELA SKVIGDPGTF AASTSQQLAG LNPPELTNLA 240 SNLIQEAYNE VHNVATPTLT RQQSGRTSDT SSQKSHLTAI QEDSGGISGG CEQPSIPGVK 300 NNSCNQMQNS PGGYNSNNTS RNSDPFSPQG NGAAEMRPSP GTGASLERPT PRRGAIPTLF 360 TDTQTTTHNQ KTYQSNIYMP HTLPELRISP TVKVEGGLDL NNHHLHPATG PNCSGNSIQP 420 ARGSDLDLNA FGWER* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 1e-20 | 40 | 96 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-20 | 40 | 96 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 1e-20 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 1e-20 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 1e-20 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 1e-20 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-20 | 40 | 96 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-20 | 40 | 96 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-20 | 40 | 96 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-20 | 40 | 96 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-20 | 40 | 96 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-20 | 40 | 96 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024393441.1 | 0.0 | myb-related protein 2-like | ||||
| Refseq | XP_024393442.1 | 0.0 | myb-related protein 2-like | ||||
| Refseq | XP_024393443.1 | 0.0 | myb-related protein 2-like | ||||
| Refseq | XP_024393444.1 | 0.0 | myb-related protein 2-like | ||||
| Refseq | XP_024393445.1 | 0.0 | myb-related protein 2-like | ||||
| Refseq | XP_024393446.1 | 0.0 | myb-related protein 2-like | ||||
| Refseq | XP_024393447.1 | 0.0 | myb-related protein 2-like | ||||
| Refseq | XP_024393448.1 | 0.0 | myb-related protein 2-like | ||||
| TrEMBL | A0A2K1JN08 | 0.0 | A0A2K1JN08_PHYPA; Uncharacterized protein | ||||
| STRING | PP1S37_226V6.1 | 0.0 | (Physcomitrella patens) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP78 | 17 | 262 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G13640.1 | 7e-64 | G2-like family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Pp3c13_23440V3.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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