PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c13_23373V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YC

Protein Properties

Length: 378aa MW: 41344.2 Da PI: 4.0029

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c13_23373V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	46	1.2e-14	241	311	20	90
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ++P++r+k+i+k d+dv+ +s++a +l+++a lf+ l+ s+ ++kr+t++ d+ a ++t f Pp3c13_23373V3.2.p 241 AFPITRVKRIIKLDKDVRLVSSDALALITQATALFVQSLSSASFKVMLQSKRKTIRGPDVILAAKSTRQFR 311 69*************************************************************99999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	2.2E-15	242	303	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-16	242	310	IPR009072	Histone-fold
SuperFamily	SSF47113	2.97E-15	242	311	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MARKEEIDAV SCAIMCMDTL AMDSMDMNPE EFPNTNASPV IPTGPPSKDL TNSDSCVDER 60 PQRGKELENS VGSGGAEQTC YDDEGLMTDP GTPDSHGSPD TPGSPEELHD LIETKDMNLD 120 MTENDLDEEK GYDENGLMTN LSTPDNPGTP RDEFSDDSHE LDETKDANLD IIENDLGESG 180 TDDDAQDTDP VTPQEGLPRY GDDPDETKDM NVDGAEKSFE MLDDGQDEGE KSFDGERFVP 240 AFPITRVKRI IKLDKDVRLV SSDALALITQ ATALFVQSLS SASFKVMLQS KRKTIRGPDV 300 ILAAKSTRQF RECLENDLAT LLEESNQDTA NGEDIPVEKE HGTSGEPTRK RSQQPKSSKK 360 QQLAPPGSRP ITIFFKT*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MARKEEIDAV SCAIMCMDTL AMDSMDMNPE EFPNTNASPV IPTGPPSKDL TNSDSCVDER  60
PQRGKELENS VGSGGAEQTC YDDEGLMTDP GTPDSHGSPD TPGSPEELHD LIETKDMNLD  120
MTENDLDEEK GYDENGLMTN LSTPDNPGTP RDEFSDDSHE LDETKDANLD IIENDLGESG  180
TDDDAQDTDP VTPQEGLPRY GDDPDETKDM NVDGAEKSFE MLDDGQDEGE KSFDGERFVP  240
AFPITRVKRI IKLDKDVRLV SSDALALITQ ATALFVQSLS SASFKVMLQS KRKTIRGPDV  300
ILAAKSTRQF RECLENDLAT LLEESNQDTA NGEDIPVEKE HGTSGEPTRK RSQQPKSSKK  360
QQLAPPGSRP ITIFFKT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.18474	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024391896.1	0.0	uncharacterized protein LOC112290136
TrEMBL	A0A2K1JN07	0.0	A0A2K1JN07_PHYPA; Uncharacterized protein
STRING	PP1S37_218V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	1e-11	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	Pp3c13_23373V3.2.p