PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c13_23373V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YC

Protein Properties

Length: 292aa MW: 32117.1 Da PI: 4.0844

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c13_23373V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	46.6	7.4e-15	155	225	20	90
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ++P++r+k+i+k d+dv+ +s++a +l+++a lf+ l+ s+ ++kr+t++ d+ a ++t f Pp3c13_23373V3.1.p 155 AFPITRVKRIIKLDKDVRLVSSDALALITQATALFVQSLSSASFKVMLQSKRKTIRGPDVILAAKSTRQFR 225 69*************************************************************99999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.5E-15	156	217	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.9E-17	156	224	IPR009072	Histone-fold
SuperFamily	SSF47113	2.1E-15	156	225	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MTDPGTPDSH GSPDTPGSPE ELHDLIETKD MNLDMTENDL DEEKGYDENG LMTNLSTPDN 60 PGTPRDEFSD DSHELDETKD ANLDIIENDL GESGTDDDAQ DTDPVTPQEG LPRYGDDPDE 120 TKDMNVDGAE KSFEMLDDGQ DEGEKSFDGE RFVPAFPITR VKRIIKLDKD VRLVSSDALA 180 LITQATALFV QSLSSASFKV MLQSKRKTIR GPDVILAAKS TRQFRECLEN DLATLLEESN 240 QDTANGEDIP VEKEHGTSGE PTRKRSQQPK SSKKQQLAPP GSRPITIFFK T*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.18474	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024391896.1	0.0	uncharacterized protein LOC112290136
TrEMBL	A0A2K1JN07	0.0	A0A2K1JN07_PHYPA; Uncharacterized protein
STRING	PP1S37_218V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	1e-11	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	Pp3c13_23373V3.1.p