PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_22410V3.1.p
Common NamePHYPADRAFT_72483
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 754aa    MW: 81888.3 Da    PI: 7.7307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_22410V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.25.2e-17329378255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Pp3c13_22410V3.1.p 329 RSKHSATEQRRRSKINDRFQMLRDLVPHS----DQKRDKASFLLEVIEYIQVLQ 378
                         889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-21327390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.66327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17328389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.30E-15329382No hitNo description
PfamPF000101.5E-14329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MAFVATAGQK QLVPERAIRS SSSLGYSSFG ELAPGDSVTQ QQREFQVVHR YTMAQQHAER  60
AQSRHFAHSE DTKPSTHDFL SLYDKGSQQA ENVSSAGLSS SLTTHDFLQP LERNGARPTS  120
RDAPVLREKH SSGENGQSRH STPGPGEQAH PTSSPNYAAI KVPYTVPPNS MLRMVGEAEA  180
VRQGRNYPIA TLSSREDHSG SETFKGVEIA VGPEAANAQE NLAHWPGVRF QFGMPPDLTF  240
TAGNPAAKSV VENGHQLLPT MTKHWAQAAQ GMIESPKRPA RPPSDEDEDD DEDSSERPKV  300
NRKEPMLRKG DGAQRMDSKN ADLRGVTPRS KHSATEQRRR SKINDRFQML RDLVPHSDQK  360
RDKASFLLEV IEYIQVLQDK VRKYETVEQG RHQERLKSMV WDLCKRGAAG SGDETSQINA  420
LVFAKDLNSG VRSVDIKPGT EVPADRVPRS SEEAAPISEA HSTGGLNAQQ ASSRPACSIH  480
SCVSSLGGEK ESATAVTAVG VPLQQAIPSP HAFPIVPSKG QREQDSNRGT PASNSNAPRK  540
EKTSDMDLVS SRENGYAHDT TPDHQFEVRP RISSGQADQN SDHQPKDHQM SATTIVGRMD  600
GVQAGLLSSA PRQPQGGPQH KEDANKHTRH PQTNQNDHMA TRDGFAVFPN IPQPFPRIQG  660
GVINVSSVYS QGLLDTLTRA LQSSGVDLSR ANISVQIDLG KNATVAPGDT SAKVATTPES  720
SAQSHQSQGR TRPAPSVPES EPARKRPKVE NHE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.47620.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392458.10.0uncharacterized protein LOC112290452
TrEMBLA0A2K1JMX70.0A0A2K1JMX7_PHYPA; Uncharacterized protein
STRINGPP1S37_126V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.31e-30bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]