PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_21530V3.5.p | ||||||||
Common Name | DP3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | E2F/DP | ||||||||
Protein Properties | Length: 310aa MW: 34148.2 Da PI: 6.0062 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 83.2 | 2.1e-26 | 41 | 122 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +k+Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i k +k++i+wkg Pp3c13_21530V3.5.p 41 GKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEftnpdsphvspdqqqyDEKNIRRRVYDALNVLMAVGIILK-DKKDIQWKG 122 79********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.4E-44 | 36 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.5E-33 | 39 | 122 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.31E-21 | 42 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 5.4E-25 | 42 | 122 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 4.70E-40 | 127 | 229 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.31E-40 | 129 | 238 | No hit | No description |
SMART | SM01138 | 7.8E-59 | 129 | 305 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 2.7E-35 | 130 | 236 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MVSNGIDARL SHLDDPDSPD AEVIGGKKKR GGRAGGGEKG GKGLRHFSMK VCEKVESKGR 60 TTYNEVADEL VAEFTNPDSP HVSPDQQQYD EKNIRRRVYD ALNVLMAVGI ILKDKKDIQW 120 KGFPSASLDD VADLKAESMR IRGRIERKSA YLHELQSQMT GLRNLVSRNE RLSQGNNSVP 180 HVALPFILVQ TRPQATVEVE ISEDMQVVHF DFNSTPFELH DDAYVLKAMN LQEQPDSNCP 240 DGLDHADFDD GLGNFGEDSP PLSGVFQRSM YPAHPSSPYY ASMSSAGKNS SWPPVPGILK 300 SKVKHENAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 7e-39 | 33 | 127 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 36 | GGRAGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15587 | 0.0 | gametophore| protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB547342 | 0.0 | AB547342.1 Physcomitrella patens DP;3 RNA for DP transcription factor;3, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391963.1 | 0.0 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-103 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | G1UDG2 | 0.0 | G1UDG2_PHYPA; DP transcription factor3 | ||||
STRING | PP1S37_43V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 4e-96 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_21530V3.5.p |