PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_21190V3.4.p
Common NamePHYPADRAFT_161886
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Dof
Protein Properties Length: 709aa    MW: 74020.5 Da    PI: 5.9318
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_21190V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.94.6e-38266325261
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         ++k  +cprCds +tkfCyynny+ +qPr+fCk+C+ryWt+GG+lrnvPvG+grrk k+ 
  Pp3c13_21190V3.4.p 266 PDKLAPCPRCDSLDTKFCYYNNYNANQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKTKHG 325
                         78899***************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.4E-31268324IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.407270324IPR003851Zinc finger, Dof-type
PROSITE patternPS013610272308IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-23274323IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MGSSSHENGG DEPRVSKPAT VFLGDLSLSG EGPGFCGYSG PTHANTVNYD LGSHKEHYLH  60
QPQPEGEKGG LADRMNRNKG QQPSLISKDA EGQTTGLELN ASEVKTHLSC ENPITNDVED  120
DDDGLSGAAD KLQGDVAGVH EIVVTPFPLS SEKQESETEP LDSIHLKSNS GDVVADGSSL  180
ELANELQNEV PGVSGLDQSA GTEALGPPQH QTAKLEEGTV GRRPLAVADN EDTVGSVRPP  240
PVDGDLVGPS PKQAKVQHQK PALKKPDKLA PCPRCDSLDT KFCYYNNYNA NQPRHFCKNC  300
QRYWTAGGTL RNVPVGAGRR KTKHGNSHVR HGGLLDIPAA RQDSDMALSR PCLSRGASVP  360
DQVSPLPASS SSSPSTITSL PSSQDRSSSD AVTQTCSMRP AEAVRKHHIP EPQVNVSGDS  420
GNRLLKAEHG GGCEPVLAGE AENCAEACTS SLPGSPQVDA ALASQEVQSM LRGPPTTLIP  480
VCGGIVRPVG ILDGSVWTAA PTPFGLFNGS WPYGYNVGWS GPAPGAPGAP TCPPGGTLVS  540
CQPAVAWSAP PNGLWSNVCW GSTLIPGMPA GLPGPSWMSP GWGAGWPMPW GPDAAAAAAA  600
AASASMQVPA VPMSGNVSPV QSRLPIRPVL NKHPRDRPEL ERVESSLWVP KMVKIDDAVN  660
TPRSSVWTAV GAENRVETVA SGSNFKAFLP VGDNKVSITS GDRKQVKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.48690.0gametophore| protonema| sporophyte
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6266990.0AB626699.1 Physcomitrella patens PpDof3 mRNA for Dof transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392475.10.0uncharacterized protein LOC112290457 isoform X2
TrEMBLA0A2K1JN530.0A0A2K1JN53_PHYPA; Uncharacterized protein
STRINGPP1S37_7V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.13e-30cycling DOF factor 3
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]