PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_2080V3.1.p
Common NamePHYPADRAFT_166279
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 442aa    MW: 47901.3 Da    PI: 8.6281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_2080V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11240290155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h   Er RR+ +N  f +Lr llP++      K +K+++  + ++YI+sLq
  Pp3c13_2080V3.1.p 240 QRENHIWSERERRKGMNCLFTRLRNLLPHP----TSKTDKSTVIGEIIKYIQSLQ 290
                        7999*************************9....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15237302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-13237294No hitNo description
Gene3DG3DSA:4.10.280.109.8E-15238305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.456239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9240290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MPSQSQARQV GLQSTYPTQL NFNALPPSTA RAHCRSNAPP SATVVDMESW FPASTGASEF  60
VTRNCGLNSC QQRTEMPVGA VSDSTGISTG CVFSQLVDFQ SDTWWPPITV QAALPTDILT  120
QRNEGQIGCD TKTGALNNSA SFSTGNEMES WRRETVNVDV SDLGLVSEHP EPAMAVVSVA  180
PILVSLSCTK SAGRKESQRL EKGESVSAPT SPSELRLVKE KTNQLGVKKS KGSGKRPVSQ  240
RENHIWSERE RRKGMNCLFT RLRNLLPHPT SKTDKSTVIG EIIKYIQSLQ VKLEMLTKKR  300
QQVMAAVLAR PGMFVSNNSG LTLVDHSNFD PSSMTAITAL PPPGKESCLQ SYLGTNVGLH  360
VCGLNVFITT SSPRGRQGLL QQLLVTIHKH QLDVINATIS TSSTSVFHCL HCQASQNAEV  420
LNNDLHSALQ SIITNFGLPQ Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.145800.0sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392199.10.0transcription factor bHLH95-like
TrEMBLA0A2K1JKD90.0A0A2K1JKD9_PHYPA; Uncharacterized protein
STRINGPP1S107_205V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-13bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]