PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_15520V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 766aa    MW: 82025 Da    PI: 6.8806
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_15520V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30375434159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Pp3c13_15520V3.1.p 375 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVApGCPVRKQVQRCADDVSILITTYEGTHNHP 434
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.5E-5108140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.91114143IPR007087Zinc finger, C2H2
PROSITE patternPS000280116138IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.20.25.806.5E-33360434IPR003657WRKY domain
SuperFamilySSF1182909.55E-28368435IPR003657WRKY domain
PROSITE profilePS5081128.438370436IPR003657WRKY domain
SMARTSM007742.3E-38375435IPR003657WRKY domain
PfamPF031063.2E-27376434IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MCSLNWSMGA PNSESDDKEA VGRFDNMVRA AISGETQRKI SSGRVDMVRK IDLSVKLDED  60
SVDDDEEMES SEPEEHDHTM SDHYMPSVKD EEVSSPQPRL QLGSQQYHHS GCTFKCEVEG  120
CGSVYGSRDE LLSHSLTHRG TSASDRSTVE DDTPPTSPAG LPASEPIQLQ SELREARLEI  180
KRLAEENEYF HSMLTHLTLE CHKLRMHIAA SAQRDTLGDP THSLVTQSET AAASPATHEN  240
LQRGYTEKNS KLHTASSPKS PPREQNLKKL GRARILYNES QKSEDMNVGT ASPSGSEMSS  300
LKSSPSRPSH AASPSQEADR MQEGAEDQTS WRLNKVQKIT HTDVPSGVPI TQVEADPNIR  360
KARVSVRARS DAPTMNDGCQ WRKYGQKMAK GNPCPRAYYR CTVAPGCPVR KQVQRCADDV  420
SILITTYEGT HNHPLAPAAA AMASTTSAAA CMLVSGSTSS DMNRMTTAPP FLQLAGSQGQ  480
NSTAVPMISA SAPYQTITLD LTNDSTAHLS PRLNKGSGVP LANYNQNFQG AATTSGVTVG  540
QSGGQQVMMP PQQPVIRASP MFLNNVMSYA PVVTNCAPLS SSGSAFSPAG TSGDHQAMQH  600
QHHPRTSRIY GDHQPQASTP THANSLLSAG VPQFLAESVT AATAAITSDP NFTYALAAAI  660
TSIISSQSSH DVHSKLTQIA ANQSREGNQQ RMSFPSSAFT AVAASRSKKP DGGRISPSRA  720
VPEEATLSSM LSSALMSVSN KDQPAATKCV KPSASHGSMA ISERQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21365435776Probable WRKY transcription factor 4
2lex_A2e-21365435776Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896206e-37DQ889620.1 Physcomitrella patens clone 4 WKRY transcription factor-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392883.10.0WRKY transcription factor 42-like
TrEMBLA0A2K1JM360.0A0A2K1JM36_PHYPA; Uncharacterized protein
STRINGPP1S158_166V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-49WRKY family protein