PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_14180V3.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YC | ||||||||
Protein Properties | Length: 257aa MW: 28883.4 Da PI: 8.0236 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 166.4 | 3.7e-52 | 54 | 158 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql +fw++q +e+++d k h+lPlarikki+k+dedvkmi++eaPvl+skace+fileltlrsw+h+eenkrrtl+++dia a+tr di Pp3c13_14180V3.9.p 54 QLAQFWAQQtqeMEEVNDSKTHQLPLARIKKIMKSDEDVKMIATEAPVLFSKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGDI 144 7899**999889******************************************************************************* PP NF-YC 89 fdflvdivprdelk 102 fdflvdivprdelk Pp3c13_14180V3.9.p 145 FDFLVDIVPRDELK 158 ***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.05E-32 | 17 | 148 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.2E-21 | 76 | 139 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.8E-36 | 77 | 154 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MATQHAHVPP SSTAQMSPHA APTIRLQQQM HYPNHAPHQQ QQLQLHYQQI QKQQLAQFWA 60 QQTQEMEEVN DSKTHQLPLA RIKKIMKSDE DVKMIATEAP VLFSKACEMF ILELTLRSWI 120 HTEENKRRTL QRNDIAGAIT RGDIFDFLVD IVPRDELKEE DLGVPWSGVP ADGVQYGGMY 180 YPPMPGQPIH PMRAPRMMVG QPAVPPNPQM MYQSPLVIAG FRIPLPSCAC ARAAAATTAA 240 TVLICRVYNS LLYALR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-49 | 62 | 154 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 132 | RRTLQRN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2519 | 1e-147 | gametophore| protonema| sporophyte |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392054.1 | 0.0 | nuclear transcription factor Y subunit C-2-like isoform X1 | ||||
Swissprot | Q9SMP0 | 3e-63 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2K1JLU4 | 1e-102 | A0A2K1JLU4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S158_8V6.1 | 1e-160 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-55 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_14180V3.9.p |
Publications ? help Back to Top | |||
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