PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_13680V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 480aa    MW: 53893.7 Da    PI: 7.8875
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_13680V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.91.1e-1285175281
            trihelix   2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                         W++ e  aL++a re++ +l +++           ++  +W+ev   + + g+ r+pk+ + kw+nl++ +k+i++++++++ ++ s + +
  Pp3c13_13680V3.5.p  85 WQDAEMDALVRAFREVHMKLTSAAgngkkvkqifkSANDKWQEVRMLLLASGVDRQPKEIERKWSNLSTAFKQIADWNNNKKMGRPSYWDL 175
                         ***************99999986444556666666999******************************************98777777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.9E-1085177No hitNo description
Gene3DG3DSA:3.40.50.6209.4E-68262479IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523741.6E-43265479No hitNo description
PfamPF014676.6E-24269452IPR004821Cytidyltransferase-like domain
TIGRFAMsTIGR004822.5E-40270478IPR005248Probable nicotinate-nucleotide adenylyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009435Biological ProcessNAD biosynthetic process
GO:0016779Molecular Functionnucleotidyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDEGAPPTPV VLESSLSSSI MDLGQTEGYH HNFGTPYGRE GREGNLDEGN IRVGNGGGVG  60
VGEDEEDKLD KECEGMGRKR RAEIWQDAEM DALVRAFREV HMKLTSAAGN GKKVKQIFKS  120
ANDKWQEVRM LLLASGVDRQ PKEIERKWSN LSTAFKQIAD WNNNKKMGRP SYWDLDETLK  180
KEKTKAKELP ATFRVQLFEA MAEFMGDRQG PRSRSPAQAA SPGFLPVFCL PRPSPAPGVV  240
EVPLPLEKLG IHGNRLDAAN QKRRRVVILA PGRFNPPTYM HLRMFELGRD ALVAEGYHVL  300
GGYMSPFNDL CHKKGLAPAE QRIRMCELAV ADSPFIMVDP WEAKQNSYQR TLTVLARIDM  360
LVNFNNFAPD EKVKVMLLCG TDVLESIATP GVWLSDQVRT LLHEYGIVCI NRDDKDARRL  420
VFEHEILYNN RRQILVVDGV IENNISTAAI RRNLSRGLSV KYLIPDSVID HINMNHVYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gzu_A9e-5025847912266NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_B9e-5025847912266NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_C9e-5025847912266NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261265KRRRV
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the formation of NAD(+) from nicotinamide mononucleotide (NMN) and ATP. Can also use the deamidated form; nicotinic acid mononucleotide (NaMN) as substrate. {ECO:0000250|UniProtKB:Q9HAN9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393283.10.0uncharacterized protein LOC112290805
SwissprotF4K6872e-84NMNAT_ARATH; Nicotinamide/nicotinic acid mononucleotide adenylyltransferase
TrEMBLA0A2K1JLR90.0A0A2K1JLR9_PHYPA; Uncharacterized protein
STRINGPP1S5_53V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Hashida SN,Takahashi H,Kawai-Yamada M,Uchimiya H
    Arabidopsis thaliana nicotinate/nicotinamide mononucleotide adenyltransferase (AtNMNAT) is required for pollen tube growth.
    Plant J., 2007. 49(4): p. 694-703
    [PMID:17270012]