PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_13680V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 480aa MW: 53893.7 Da PI: 7.8875 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.9 | 1.1e-12 | 85 | 175 | 2 | 81 |
trihelix 2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 W++ e aL++a re++ +l +++ ++ +W+ev + + g+ r+pk+ + kw+nl++ +k+i++++++++ ++ s + + Pp3c13_13680V3.3.p 85 WQDAEMDALVRAFREVHMKLTSAAgngkkvkqifkSANDKWQEVRMLLLASGVDRQPKEIERKWSNLSTAFKQIADWNNNKKMGRPSYWDL 175 ***************99999986444556666666999******************************************98777777654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.9E-10 | 85 | 177 | No hit | No description |
Gene3D | G3DSA:3.40.50.620 | 9.4E-68 | 262 | 479 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
SuperFamily | SSF52374 | 1.6E-43 | 265 | 479 | No hit | No description |
Pfam | PF01467 | 6.6E-24 | 269 | 452 | IPR004821 | Cytidyltransferase-like domain |
TIGRFAMs | TIGR00482 | 2.5E-40 | 270 | 478 | IPR005248 | Probable nicotinate-nucleotide adenylyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009435 | Biological Process | NAD biosynthetic process | ||||
GO:0016779 | Molecular Function | nucleotidyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MDEGAPPTPV VLESSLSSSI MDLGQTEGYH HNFGTPYGRE GREGNLDEGN IRVGNGGGVG 60 VGEDEEDKLD KECEGMGRKR RAEIWQDAEM DALVRAFREV HMKLTSAAGN GKKVKQIFKS 120 ANDKWQEVRM LLLASGVDRQ PKEIERKWSN LSTAFKQIAD WNNNKKMGRP SYWDLDETLK 180 KEKTKAKELP ATFRVQLFEA MAEFMGDRQG PRSRSPAQAA SPGFLPVFCL PRPSPAPGVV 240 EVPLPLEKLG IHGNRLDAAN QKRRRVVILA PGRFNPPTYM HLRMFELGRD ALVAEGYHVL 300 GGYMSPFNDL CHKKGLAPAE QRIRMCELAV ADSPFIMVDP WEAKQNSYQR TLTVLARIDM 360 LVNFNNFAPD EKVKVMLLCG TDVLESIATP GVWLSDQVRT LLHEYGIVCI NRDDKDARRL 420 VFEHEILYNN RRQILVVDGV IENNISTAAI RRNLSRGLSV KYLIPDSVID HINMNHVYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gzu_A | 9e-50 | 258 | 479 | 12 | 266 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1gzu_B | 9e-50 | 258 | 479 | 12 | 266 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1gzu_C | 9e-50 | 258 | 479 | 12 | 266 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 265 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the formation of NAD(+) from nicotinamide mononucleotide (NMN) and ATP. Can also use the deamidated form; nicotinic acid mononucleotide (NaMN) as substrate. {ECO:0000250|UniProtKB:Q9HAN9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393283.1 | 0.0 | uncharacterized protein LOC112290805 | ||||
Swissprot | F4K687 | 2e-84 | NMNAT_ARATH; Nicotinamide/nicotinic acid mononucleotide adenylyltransferase | ||||
TrEMBL | A0A2K1JLR9 | 0.0 | A0A2K1JLR9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S5_53V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_13680V3.3.p |
Publications ? help Back to Top | |||
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