PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c13_1310V3.2.p

Common Name

PHYPADRAFT_107600, SMH1501

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 332aa MW: 36114.8 Da PI: 9.4063

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c13_1310V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.6	2.5e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l +v+++G+g W++I + + R+ ++k++w++ Pp3c13_1310V3.2.p 5 KQKWTAEEEAALRAGVEKYGPGKWRAIQKDSKfgpclTSRSNVDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.36	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.14E-16	2	58	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-9	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-10	5	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-15	5	56	IPR009057	Homeodomain-like
CDD	cd11660	8.66E-21	6	56	No hit	No description
SMART	SM00526	3.3E-13	115	180	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	21.862	117	185	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.0E-13	119	188	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.57E-14	119	193	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	6.4E-10	120	178	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0031627	Biological Process	telomeric loop formation
GO:0000784	Cellular Component	nuclear chromosome, telomeric region
GO:0000786	Cellular Component	nucleosome
GO:0003691	Molecular Function	double-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MGAPKQKWTA EEEAALRAGV EKYGPGKWRA IQKDSKFGPC LTSRSNVDLK DKWRNMSVSA 60 NGLGSARKPL AITGGPGMMT LMEDAVSVLP LAVLPPIDDA QALKRESADT SGDRKSLGSR 120 YDDMVFEAVM GLKETYGSSN ASIASYIEER HAVPSNFRRL LTTKLKELAL AGKLVKVRQN 180 YKMNEGNESP APVVEEPEYR ERENTIVVND GRVQKESRLR RQDVQIEESN KRHPSRLPRD 240 SWDPRDSSKK LRPESQPYKK PKTDIEHLAR ARAKTAEEAA RAAAVAVAEA EAAAAAAEAA 300 AREAEAAEAE AEALEAAAEV AAAAAIRPQK K*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.11173	0.0	protonema\| sporophyte

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269\|PubMed:14576282}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats 5'-TTTAGGG-3', but can also bind to the single G-rich and C-rich telomeric strand. {ECO:0000269\|PubMed:14576282}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024392517.1	0.0	telomere repeat-binding factor 1-like isoform X1
Refseq	XP_024392518.1	0.0	telomere repeat-binding factor 1-like isoform X2
Swissprot	Q6WS85	3e-45	SMH1_MAIZE; Single myb histone 1
TrEMBL	A9T749	0.0	A9T749_PHYPA; Single myb histone protein
STRING	PP1S176_113V6.2	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	6e-34	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	Pp3c13_1310V3.2.p
Entrez Gene	5937649

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367] Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]