PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_10830V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 577aa    MW: 62846.6 Da    PI: 5.785
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_10830V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26e-32347403258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         +Dgy+WrKYGqK vk+s++prsYYrCts++Cpv+k++er+a+dp +v++tYeg+Hnh
  Pp3c13_10830V3.1.p 347 EDGYKWRKYGQKAVKNSTHPRSYYRCTSHTCPVRKRIERKADDPGLVITTYEGTHNH 403
                         8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-34331405IPR003657WRKY domain
SuperFamilySSF1182904.97E-28338404IPR003657WRKY domain
PROSITE profilePS5081130.699341406IPR003657WRKY domain
SMARTSM007741.4E-36346405IPR003657WRKY domain
PfamPF031062.3E-25347403IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MSEMTREGEG EQPQAETDPS SIFDQLIIDE DVQISNSPRR KDGKKRAAKP ARSPSSLTVS  60
PPPRDNSAFF QPQQQQQPSY LSSPPPFDMS IFMPSPTAPW IKFPLVLHSP QSVDSHCLNL  120
PNSTGGNLTP NHNVQLSAAP FDQLSPPDSD LLDSSPEYPW FPAPQNASPS ASNFGPLLQL  180
LNLSPMAVKV GERSLPDMSS YNGDMNSVAA SSGMSSDAVS NQESSSRRGR SPSPTPSRLS  240
DVSPMNSPLT STPNSPFDSP FGSEGGYFSD GGTPIDIIGV LERSVSSSKR KTPDRALDES  300
EETQSLDEPD TKKQATKKEK KGTVKLNKRV REPRYAIQTR SEVDVLEDGY KWRKYGQKAV  360
KNSTHPRSYY RCTSHTCPVR KRIERKADDP GLVITTYEGT HNHLSPVTEA ANAVAASLKN  420
SDTSSNTAPS EENRAAAGTS FPFPPIQERN EFDLSVQIRS GEIDLDAANR DVTPAANAMS  480
QASQSLPAGP HMPHIPTSTD SYRVHNPPQT LNQAQLEAER LLKELQGPMP ASMVIPDPQL  540
GRSSQEMFDL SNPLPHAQSY QGLLDDMLRQ SGQHHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-24336406777Probable WRKY transcription factor 4
2lex_A6e-24336406777Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392983.10.0probable WRKY transcription factor 3
RefseqXP_024392984.10.0probable WRKY transcription factor 3
TrEMBLA0A2K1JLF40.0A0A2K1JLF4_PHYPA; Uncharacterized protein
STRINGPP1S5_354V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.11e-35WRKY family protein