PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_10800V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 435aa    MW: 48136.4 Da    PI: 9.0073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_10800V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.2e-52171451128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelv +yL++k+e+k + +  vi+e+d+yk++PwdLp k+  +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Pp3c13_10800V3.1.p  17 LPPGFRFHPTDEELVLHYLCRKAESKVFAI-PVIAEIDLYKFDPWDLPGKAIFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKP 106
                         79*************************999.89***************7766799************************************ PP

                 NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++  + +++g+kk Lvfy+grapkg+kt+W+mheyrl
  Pp3c13_10800V3.1.p 107 IHTAvgGIRKIGVKKALVFYEGRAPKGVKTNWIMHEYRL 145
                         **99877788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6312174IPR003441NAC domain
PROSITE profilePS5100561.07917174IPR003441NAC domain
PfamPF023651.7E-2718145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MVIMSSPSGG PVAQLQLPPG FRFHPTDEEL VLHYLCRKAE SKVFAIPVIA EIDLYKFDPW  60
DLPGKAIFGE REWYFFSPRD RKYPNGARPN RAAASGYWKA TGTDKPIHTA VGGIRKIGVK  120
KALVFYEGRA PKGVKTNWIM HEYRLAEGVC ASVHAHRKGS LRLDDWVLCR IYKKSTNAQR  180
TGKERDSSSC VEEVLASLPE IDDPKLVLPR LGSFTGFPEP EDNHFMDSLL LGENKSVDAE  240
SSPEFKRSVL GLQRGMQPQP GTLGSHILSA FNSKFPFGWK MPRPVDGPFD SQQFDKFNRQ  300
LLELGPTSSQ RPTTLSLRQP APDSAMRQVE NVLMPLRPGT GAIPENRTIS DEEVQSTSRA  360
SSMGQFSGTS NNEGLESIFT FNYEQPRSTI NAMLPAPTTG PNTELRFSGS GMSASQPQYT  420
QSRAPNYSYN PSSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-811118011171NO APICAL MERISTEM PROTEIN
1ut4_B2e-811118011171NO APICAL MERISTEM PROTEIN
1ut7_A2e-811118011171NO APICAL MERISTEM PROTEIN
1ut7_B2e-811118011171NO APICAL MERISTEM PROTEIN
3swm_A2e-811118014174NAC domain-containing protein 19
3swm_B2e-811118014174NAC domain-containing protein 19
3swm_C2e-811118014174NAC domain-containing protein 19
3swm_D2e-811118014174NAC domain-containing protein 19
3swp_A2e-811118014174NAC domain-containing protein 19
3swp_B2e-811118014174NAC domain-containing protein 19
3swp_C2e-811118014174NAC domain-containing protein 19
3swp_D2e-811118014174NAC domain-containing protein 19
4dul_A2e-811118011171NAC domain-containing protein 19
4dul_B2e-811118011171NAC domain-containing protein 19
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.183563e-48protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392980.10.0NAC transcription factor 47-like
RefseqXP_024392981.10.0NAC transcription factor 47-like
TrEMBLA0A2K1JLF20.0A0A2K1JLF2_PHYPA; Uncharacterized protein
STRINGPP1S5_359V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.27e-90NAC family protein