PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_1060V3.3.p | ||||||||
Common Name | PHYPADRAFT_107600, SMH1501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB_related | ||||||||
Protein Properties | Length: 211aa MW: 22954.1 Da PI: 8.4193 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l +v+++G+g W++I + + R+ ++k++w++ Pp3c13_1060V3.3.p 5 KQKWTAEEEAALRAGVEKYGPGKWRAIQKDSKfgpclTSRSNVDLKDKWRN 55 79************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.36 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-9 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-10 | 5 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.15E-22 | 6 | 56 | No hit | No description |
SMART | SM00526 | 2.4E-13 | 115 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 22.582 | 117 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.9E-14 | 119 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.44E-15 | 119 | 193 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 3.9E-10 | 120 | 178 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALRAGV EKYGPGKWRA IQKDSKFGPC LTSRSNVDLK DKWRNMSVSA 60 NGLGSARKPL AITGGPGMMT LMEDAVSVLP LAVLPPIDDA QALKRESADT SGDRKSLGSR 120 YDDMVFEAVI GLKEPYGSSN ASITSYIEER HAVPSNFRRL LTTKLKELAL AGKLVKVRQN 180 YKVNDGSESP APVVEEPDHL ERENAIVVSD V |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11660 | 0.0 | gametophore| protonema| sporophyte |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393158.1 | 1e-153 | single myb histone 1-like | ||||
TrEMBL | A9T749 | 1e-142 | A9T749_PHYPA; Single myb histone protein | ||||
STRING | PP1S176_113V6.2 | 1e-138 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 4e-36 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_1060V3.3.p |
Entrez Gene | 5937649 |
Publications ? help Back to Top | |||
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