PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_4260V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 749aa MW: 79515.8 Da PI: 8.1109 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.4 | 1.6e-29 | 372 | 430 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt gCpv+k+v+r+a+d+++++ tYeg+Hnh+ Pp3c12_4260V3.1.p 372 NDGCQWRKYGQKMAKGNPCPRAYYRCTVMsGCPVRKQVQRCAKDTSILVSTYEGTHNHP 430 8**************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 356 | 430 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-26 | 363 | 431 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.99 | 366 | 432 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-35 | 371 | 431 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 372 | 430 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MGSPSGGVVE KEEENRFDSM PMTTAVVQKQ SGSSGRVDMV RKIDLSLKLA EDSDDKDEEM 60 ESDEHELNTQ TRLDHQMCSV EDTGANNHPV QIQVSQQHSD DGYAFTCEVK GCGSEVRERD 120 HLVVDSLTQR DKTGSDRSTV DNESPPPSPV GLPASAASKL KDELIAARTE ITRLRQENDR 180 FRSVLMHLTM EHHNLQMLVV ASMQRHSDST IYPVQSLLTQ DASSTPAAHG ALTSRNSDRE 240 NLRAGSPLKS TVHVKIAKHM GLVHALNSQV PKVEVTTRSR PRTGSASPER STSPTESLQG 300 CPPMLHPPSP AEESDQPRKR ASEPTEHKAN KSMKLAQNGA PSDVPVTQVE GDSNFRKARV 360 SVRTRSDAST INDGCQWRKY GQKMAKGNPC PRAYYRCTVM SGCPVRKQVQ RCAKDTSILV 420 STYEGTHNHP LSTAAAAMAS TTSAAASMFL AGSTSCDMTF MTSAPQFMQM AGSQGPNPAA 480 VPTNTASASF PSITLDLTNG PMNQLGLRLT NSSGSTTTNL QHLQGVITNG VVTSQRGSQQ 540 QFMTVPKQPA TGNTPMFLMN GTAGAAVVTN CAPLSNLGSA FSPAGTLSNQ FMQHHPSVES 600 SSGVFSKHPA GPQTQALQPS LAESVTAATA MITSDPKFTA ALAAAITSII GQQNQNSRNQ 660 FSQVVGNQTR QGQQNASSPP SAFTTVAPSG SVVSPHSSAA PGEAALSTVL KSALMSLTKD 720 QPANGLFNSV KPTPGHGFVV AAVPNRRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-21 | 362 | 431 | 8 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 6e-21 | 362 | 431 | 8 | 76 | Probable WRKY transcription factor 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390053.1 | 0.0 | probable WRKY transcription factor 31 | ||||
TrEMBL | A0A2K1JPG3 | 0.0 | A0A2K1JPG3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S246_89V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 1e-52 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_4260V3.1.p |