PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_3720V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRF | ||||||||
Protein Properties | Length: 749aa MW: 78242.1 Da PI: 8.1494 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.7 | 4.9e-24 | 238 | 281 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRC r+v++++k+CErH+hrgr+rsr++ e Pp3c12_3720V3.4.p 238 DPEPGRCRRTDGKKWRCARDVVPDQKYCERHMHRGRHRSRRPAE 281 79**************************************9876 PP | |||||||
2 | QLQ | 54.8 | 2.8e-19 | 173 | 208 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+++L++Q+l++Ky++a++ vP+eLl +i+k Pp3c12_3720V3.4.p 173 PFTTSQWAELEHQALIFKYMMAGVNVPQELLNPIRK 208 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-10 | 172 | 208 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.542 | 173 | 208 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-14 | 173 | 207 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.77 | 238 | 282 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.9E-20 | 239 | 279 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MHTMSSPNSP GSLSPNNHRS SLKHCRSASD MDLEDRRGGG PLKVSRTDSF HRQSDLKMHM 60 NGSPSGTMVL SSSMVSDGRL GCSPTNSCAS DGSLLGNDQG NVVSDARLLR QDSLVAASGY 120 SGGQGGGRPL SYHHLQSSSY HYKPSGGGLS MGRESMNHMG QSVHNPVNSA RAPFTTSQWA 180 ELEHQALIFK YMMAGVNVPQ ELLNPIRKSV ATMNGLASHH TANLGWGAFH LGVPNNTDPE 240 PGRCRRTDGK KWRCARDVVP DQKYCERHMH RGRHRSRRPA EGQTSSASQS GSVASSAPQP 300 AIAVGASRTS TPTPGTSLTH SNLRPAILTG NSQSTSNLGG GGMGYNSPGG SGGLSGGSSP 360 AASPAQFQLP VLSSATGSSG LTSKDYRYMN GMAVKSEMGM GPEQVLFSEA SGSTRGLSQE 420 AQSLSNLSRL NTPMNKAWQT MTSSKVLPAA QSKGSGSSSL LSFSSPQMGG LLGQEFGLMP 480 ETSQVNLAAM AASQQQHSFL SNGYGGVEST SVGRESSEGQ PLRHFFDDWP RSRDPSALAW 540 GSDVEDSDRT TSAGRGGQSN RASNNTQLSI SIPMTAAPSG DFNSQSSGGS PSRGKLSLSP 600 LKFSISRAGD ASSDMGLDVE NLRVERHHDW HRHTTAWDSM SWEPISVGGP LAEVLQLGST 660 TQCGGGGGGV DGSGPNLLAD EWLDLHQKKS ASPVQIPSPD RVASPVDVLQ ISTFASHSDS 720 SNSNSGASSP SGALPFDPAS TISEFATV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390741.1 | 0.0 | growth-regulating factor 6-like | ||||
TrEMBL | A0A2K1JPB2 | 0.0 | A0A2K1JPB2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S246_146V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 8e-34 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_3720V3.4.p |